Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04280.1 | EES10309 | AT3G55460.1 | 21798944 |
| AT5G04280.1 | EES16196 | AT3G55460.1 | 21798944 |
| AT5G04280.1 | KXG37841 | AT5G04280.1 | 21798944 |
| AT5G04280.1 | OQU88590 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019041_P001 | Maize | extracellular, plasma membrane | 94.35 | 96.93 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 78.41 | 80.55 |
| TraesCS2B01G259400.1 | Wheat | nucleus | 78.07 | 80.2 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 78.07 | 80.2 |
| Zm00001d007799_P001 | Maize | mitochondrion, plastid | 90.7 | 71.09 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 64.12 | 62.06 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 43.85 | 58.93 |
| KXG37841 | Sorghum | nucleus | 61.13 | 58.23 |
| VIT_13s0019g05080.t01 | Wine grape | nucleus | 52.49 | 56.83 |
| KRG90774 | Soybean | nucleus | 50.17 | 54.12 |
| PGSC0003DMT400043581 | Potato | nucleus | 47.18 | 52.4 |
| VIT_08s0007g04870.t01 | Wine grape | cytosol | 40.2 | 48.79 |
| KRH35987 | Soybean | nucleus | 45.51 | 47.4 |
| Bra005798.1-P | Field mustard | nucleus | 46.51 | 45.75 |
| CDY11283 | Canola | nucleus | 46.51 | 45.75 |
| KXG37189 | Sorghum | nucleus | 30.23 | 45.73 |
| AT1G60650.2 | Thale cress | nucleus | 44.19 | 45.55 |
| Solyc03g071560.2.1 | Tomato | nucleus | 47.51 | 45.54 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 52.16 | 45.51 |
| KXG37870 | Sorghum | nucleus | 25.58 | 45.29 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 46.51 | 45.16 |
| EES16438 | Sorghum | nucleus | 24.25 | 44.24 |
| CDX80910 | Canola | nucleus | 38.21 | 44.06 |
| PGSC0003DMT400079815 | Potato | nucleus | 45.18 | 42.77 |
| CDY34132 | Canola | nucleus | 35.88 | 42.35 |
| Solyc11g008210.1.1 | Tomato | nucleus | 39.87 | 40.68 |
| KXG24163 | Sorghum | nucleus | 29.24 | 40.37 |
| EES01954 | Sorghum | plastid | 17.28 | 35.37 |
| KXG36665 | Sorghum | mitochondrion | 9.97 | 28.57 |
| EES14515 | Sorghum | plastid | 12.96 | 27.86 |
| EES16016 | Sorghum | mitochondrion | 22.92 | 27.6 |
| EER97356 | Sorghum | plastid | 11.96 | 27.48 |
| EES10764 | Sorghum | mitochondrion | 12.29 | 27.41 |
| OQU88096 | Sorghum | cytosol, mitochondrion, nucleus | 5.65 | 26.15 |
| EES02151 | Sorghum | mitochondrion, plastid | 12.29 | 25.34 |
| KXG32985 | Sorghum | cytosol, mitochondrion, nucleus | 5.32 | 23.88 |
| KXG36643 | Sorghum | mitochondrion | 23.92 | 22.78 |
| KXG26990 | Sorghum | plastid | 10.96 | 22.45 |
| EER92461 | Sorghum | plastid | 12.29 | 21.89 |
| KXG30823 | Sorghum | plastid | 9.97 | 7.48 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EntrezGene:8063625 | UniProt:C5XB79 | ProteinID:EER95980.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OQU88589.1 | EnsemblPlants:OQU88590 | ProteinID:OQU88590 |
| ProteinID:OQU88590.1 | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR44993 |
| PANTHER:PTHR44993:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | EnsemblPlantsGene:SORBI_3002G058700 |
| SUPFAM:SSF54928 | SUPFAM:SSF57756 | unigene:Sbi.18230 | UniParc:UPI0001A82F1A | RefSeq:XP_002459459.1 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:5667643..5677343
Molecular Weight (calculated)
32256.2 Da
IEP (calculated)
9.396
GRAVY (calculated)
-1.131
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDKVGRIF VGGLSWDTTE RTLERTFGQY GKVIEAQVVV ERETGRSRGF GFVTFSEPRA VDAAIRGMHN GELDGRNISV NKAQPRNSDD GYGYGGGGGG
101: GYSSGARGGY RSGGDVVPAA SDDCFKCGRP GHWARECPYS DGSGRTGRYS PASRYGGGTG GRGDRFGGSD RFARYDDDRY DGGRYVDSRD TYYGAGRDRY
201: ASDRYAPAAD RYSGDRYSGA DRYASSGFAR ERSYERDGGR SNGGYYRDDP RGTGGYGRGG SRGGGGGGGP ARFGGSYRDR PAPYDRPSRG GGAARAYDDR
301: Y
101: GYSSGARGGY RSGGDVVPAA SDDCFKCGRP GHWARECPYS DGSGRTGRYS PASRYGGGTG GRGDRFGGSD RFARYDDDRY DGGRYVDSRD TYYGAGRDRY
201: ASDRYAPAAD RYSGDRYSGA DRYASSGFAR ERSYERDGGR SNGGYYRDDP RGTGGYGRGG SRGGGGGGGP ARFGGSYRDR PAPYDRPSRG GGAARAYDDR
301: Y
001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY
Arabidopsis Description
RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.