Factsheet for TraesCS2D01G238900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G237400.1
TraesCS2B01G259400.1
TraesCS2D01G238900.1
TraesCS4A01G176000.13
TraesCS4A01G288500.1
TraesCS4A01G289300.1
TraesCS4B01G025600.1
TraesCS4B01G026400.1
TraesCS4B01G141700.1
TraesCS4D01G022700.1
TraesCS4D01G023800.2
TraesCS4D01G136700.4
TraesCS5A01G079000.1
TraesCS5B01G087000.2
TraesCS5D01G093200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	TraesCS4A01G176000.13	AT3G55460.1	21798944
AT5G04280.1	TraesCS4A01G289300.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4B01G025600.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4B01G141700.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4D01G022700.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4D01G136700.4	AT3G55460.1	21798944
AT5G04280.1	TraesCS5A01G079000.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS5B01G087000.2	AT3G55460.1	21798944
AT5G04280.1	TraesCS5D01G093200.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS2A01G237400.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS2B01G259400.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS2D01G238900.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS4A01G288500.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS4B01G026400.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS4D01G023800.2	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G237400.1	Wheat	nucleus	96.93	96.93
TraesCS2B01G259400.1	Wheat	nucleus	96.59	96.59
Zm00001d019041_P001	Maize	extracellular, plasma membrane	79.52	79.52
OQU88590	Sorghum	nucleus	80.55	78.41
GSMUA_Achr4P22370_001	Banana	nucleus	66.89	63.02
GSMUA_Achr2P12550_001	Banana	nucleus	46.08	60.27
TraesCS4D01G023800.2	Wheat	nucleus	62.46	57.55
Zm00001d007799_P001	Maize	mitochondrion, plastid	75.09	57.29
VIT_13s0019g05080.t01	Wine grape	nucleus	53.58	56.47
KRG90774	Soybean	nucleus	53.24	55.91
PGSC0003DMT400043581	Potato	nucleus	49.49	53.51
KRH35987	Soybean	nucleus	48.12	48.79
VIT_08s0007g04870.t01	Wine grape	cytosol	40.27	47.58
Solyc03g071560.2.1	Tomato	nucleus	49.15	45.86
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	52.9	44.93
CDY11283	Canola	nucleus	46.76	44.77
Bra005798.1-P	Field mustard	nucleus	46.76	44.77
PGSC0003DMT400079815	Potato	nucleus	48.46	44.65
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	46.76	44.19
AT1G60650.2	Thale cress	nucleus	44.03	44.18
TraesCS4D01G018500.1	Wheat	nucleus	24.91	43.98
TraesCS6D01G199100.1	Wheat	nucleus	22.87	43.23
CDX80910	Canola	nucleus	37.88	42.53
Solyc11g008210.1.1	Tomato	nucleus	42.66	42.37
TraesCS7D01G323600.1	Wheat	nucleus	32.76	41.74
CDY34132	Canola	nucleus	35.49	40.78
TraesCS5D01G516500.1	Wheat	nucleus	30.38	40.09
TraesCS5D01G020900.1	Wheat	plastid	23.55	39.66
TraesCS3D01G417800.1	Wheat	plastid	19.45	32.39
TraesCS3D01G539400.1	Wheat	mitochondrion	10.92	29.36
TraesCS4D01G205200.1	Wheat	mitochondrion	10.24	28.85
TraesCS3D01G424100.1	Wheat	mitochondrion	19.45	26.03
TraesCS2D01G294000.1	Wheat	mitochondrion	12.29	25.9
TraesCS2D01G217900.1	Wheat	mitochondrion	11.26	23.57
TraesCS2D01G184200.1	Wheat	mitochondrion	24.57	22.15
TraesCS4D01G205500.1	Wheat	plastid	12.97	22.09
TraesCS5D01G473100.1	Wheat	mitochondrion	22.18	21.24
TraesCS6D01G273200.1	Wheat	plastid	10.58	7.95

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	EnsemblPlantsGene:TraesCS2D01G238900	EnsemblPlants:TraesCS2D01G238900.1
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:+:250203745..250206476

Molecular Weight (calculated)

31903.2 Da

IEP (calculated)

9.202

GRAVY (calculated)

-1.115

Length

293 amino acids

Sequence
(BLAST)

001: MTEKEVGRIF VGGLSWDTTE RTLERAFGEF GKVIETQVVT ERDTGRSRGF GFVTFLEPRA VDVAIREMHN GELDGRTISV NKAQPRMNSD DGGYGYGGSS
101: YSSGARGGYR GAADIVPAAS DDCFKCGRPG HWARECPYSD GGRPGRYSPP SRYGNGAGGR GDRLGGSDRF GNRYVDDRYD GGHYADDRYG GGRDRYPPAA
201: DRFSGDRYGG GDRYASAGFA RERSYERDGG RTGGSYYRDE PRGTGGYGRG GPRVANGDRY GSGGPARLGA SYRDRPAPYD RPTRGARSYD DRY

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.