Factsheet for TraesCS7D01G323600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G078140.5	Barley	nucleus	99.57	99.57
TraesCS7B01G227500.2	Wheat	nucleus	99.57	99.57
TraesCS7A01G326800.1	Wheat	nucleus	99.13	96.2
KXG24163	Sorghum	nucleus	75.65	79.82
TraesCS5D01G516500.1	Wheat	nucleus	64.78	67.12
PGSC0003DMT400076497	Potato	nucleus	58.26	65.37
KRH42209	Soybean	endoplasmic reticulum	49.57	64.77
KRH58335	Soybean	nucleus	57.39	63.46
PGSC0003DMT400045627	Potato	nucleus	56.52	60.75
Bra025205.1-P	Field mustard	nucleus	55.65	55.17
CDX83617	Canola	nucleus	55.22	54.74
CDY13632	Canola	nucleus	56.52	54.39
Solyc10g047130.1.1	Tomato	nucleus	56.52	54.39
CDY48990	Canola	nucleus	56.96	53.91
CDY52166	Canola	nucleus	56.96	53.91
Bra032933.1-P	Field mustard	nucleus	56.96	53.91
AT3G26420.1	Thale cress	nucleus	54.78	51.43
VIT_18s0166g00180.t01	Wine grape	mitochondrion	59.57	48.07
Solyc01g104840.2.1	Tomato	nucleus	45.22	46.64
TraesCS4D01G018500.1	Wheat	nucleus	32.61	45.18
TraesCS6D01G199100.1	Wheat	nucleus	30.0	44.52
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	31.3	42.86
TraesCS5D01G020900.1	Wheat	plastid	31.3	41.38
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	32.61	39.27
TraesCS2D01G238900.1	Wheat	nucleus	41.74	32.76
TraesCS3D01G417800.1	Wheat	plastid	24.78	32.39
TraesCS3D01G539400.1	Wheat	mitochondrion	14.78	31.19
TraesCS4D01G205200.1	Wheat	mitochondrion	13.91	30.77
TraesCS4D01G023800.2	Wheat	nucleus	38.26	27.67
TraesCS2D01G217900.1	Wheat	mitochondrion	16.09	26.43
TraesCS2D01G294000.1	Wheat	mitochondrion	15.65	25.9
TraesCS3D01G424100.1	Wheat	mitochondrion	22.17	23.29
TraesCS5D01G473100.1	Wheat	mitochondrion	30.0	22.55
TraesCS4D01G205500.1	Wheat	plastid	16.52	22.09
TraesCS2D01G184200.1	Wheat	mitochondrion	29.13	20.62
TraesCS6D01G273200.1	Wheat	plastid	14.78	8.72

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	EnsemblPlantsGene:TraesCS7D01G323600	EnsemblPlants:TraesCS7D01G323600.1	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:413247008..413248287

Molecular Weight (calculated)

25054.9 Da

IEP (calculated)

7.887

GRAVY (calculated)

-1.416

Length

230 amino acids

Sequence
(BLAST)

001: MSDADDYRCF VGSLSWNTTD VDLKDAFGKF GRVTETKVVL DKFSGRSRGF GFVTFDDKKA MEEAVEAMNG IDLDGRNITV ERAQPQGSGR DRDGDRDYRG
101: GGDRYGGGRD FGGGRGGGRG GGGDCYKCGK PGHFARECPS GDGGDRYGSR DDRYSSRDDR YSSRDDRYGG RDGGRDDKYG GSNGSSRYGP DRGGDRYSGS
201: RDGGSRSSGG GDRYSRDRSG PYDRRSRDEY

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.