CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017930_P003	Maize	plastid	87.53	85.4
Os02t0730800-01	Rice	plastid	72.07	72.43
TraesCS6D01G273200.1	Wheat	plastid	69.33	71.28
TraesCS6B01G322400.1	Wheat	plastid	68.83	71.13
TraesCS6A01G292000.1	Wheat	plastid	68.58	70.88
GSMUA_Achr2P01230_001	Banana	nucleus	50.87	65.38
CDY19589	Canola	plastid	46.13	49.6
VIT_13s0106g00500.t01	Wine grape	plastid	50.37	49.39
AT3G20930.2	Thale cress	plastid	46.63	49.34
Bra031244.1-P	Field mustard	plastid	45.89	49.33
KRG92035	Soybean	plastid	47.88	49.23
Solyc11g007160.1.1	Tomato	plastid	47.88	48.0
CDY06395	Canola	nucleus	47.13	47.49
PGSC0003DMT400050134	Potato	plastid	46.63	46.75
KXG36665	Sorghum	mitochondrion	8.23	31.43
KXG26990	Sorghum	plastid	11.22	30.61
EER97356	Sorghum	plastid	9.98	30.53
EES10764	Sorghum	mitochondrion	8.98	26.67
EES01954	Sorghum	plastid	9.73	26.53
EES14515	Sorghum	plastid	9.23	26.43
EER92461	Sorghum	plastid	10.72	25.44
EES16438	Sorghum	nucleus	9.98	24.24
EES02151	Sorghum	mitochondrion, plastid	8.23	22.6
KXG37870	Sorghum	nucleus	8.98	21.18
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	3.24	20.0
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	3.24	19.4
EES16016	Sorghum	mitochondrion	10.97	17.6
KXG37189	Sorghum	nucleus	8.23	16.58
KXG24163	Sorghum	nucleus	8.23	15.14
KXG36643	Sorghum	mitochondrion	10.22	12.97
KXG37841	Sorghum	nucleus	8.23	10.44
OQU88590	Sorghum	nucleus	7.48	9.97

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	UniProt:A0A194YRG5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016554
InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG30823	ProteinID:KXG30823	ProteinID:KXG30823.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3004G250200	SUPFAM:SSF54928	UniParc:UPI0002207282	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:59678240..59681090

Molecular Weight (calculated)

43581.5 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.318

Length

401 amino acids

Sequence
(BLAST)

001: MDAVLPSLLI GGGLSVSVSI PTATKAGSQS ISVPHLSTSA LRSTPRRRGR RRLTLLASSS QLPPTPLSAA STESQSRSSR WVVVMDTPSA AAGGSRVSRA
101: DAVDYYAATL AQVVGSEKEA QMRIYEASWD GAYEFRCEID EDASKELAKM PGVLSVQPDM DNKSEKGNHS LSLSTSNLVS ISDSASTSSS GKNEFWLVRM
201: EKPGVEVVTK AQMVDHYTQI LMKVLGNEQD AQVSIYHISW ERDYGFCCHI DEECAKELAD VPGVLSVQPD MNFGSDNKEY KVSGDDGLKS SEGTVAADIK
301: TKRLFVTGLS FYTSEKTLRA AFEPFGELVE VKIIMDRISK RSKGYAFIEY TTEEAGGAAL KAMNGQIING WMIVVDVAKT RSRDRLSGGS NQAFRPHYQA
401: R

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.