CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041750_P001	Maize	mitochondrion	81.6	78.16
Zm00001d023734_P003	Maize	nucleus, plastid	86.4	75.26
Os12t0502200-01	Rice	mitochondrion	68.8	66.67
TraesCS3A01G428400.1	Wheat	mitochondrion	59.2	65.49
TraesCS3D01G424100.1	Wheat	mitochondrion	57.2	65.3
TraesCS3B01G465800.1	Wheat	mitochondrion	58.4	63.2
GSMUA_Achr9P07090_001	Banana	mitochondrion	52.8	55.46
EES01954	Sorghum	plastid	31.6	53.74
HORVU3Hr1G094330.2	Barley	mitochondrion	65.2	53.27
GSMUA_Achr4P03230_001	Banana	mitochondrion	52.4	51.17
VIT_17s0000g07330.t01	Wine grape	plastid	53.6	48.38
EES16438	Sorghum	nucleus	30.8	46.67
Solyc02g066930.2.1	Tomato	nucleus	39.6	45.83
KRH01278	Soybean	mitochondrion, nucleus, plastid	44.4	45.49
Bra035944.1-P	Field mustard	plastid	47.2	44.87
CDY16825	Canola	plastid	46.8	44.49
PGSC0003DMT400064758	Potato	mitochondrion	44.4	44.22
KRH03133	Soybean	nucleus	48.4	44.0
KRH56813	Soybean	mitochondrion	48.0	43.8
KRH45033	Soybean	nucleus, plastid	42.8	43.67
AT5G61030.1	Thale cress	mitochondrion	53.2	43.04
Bra012986.1-P	Field mustard	mitochondrion	51.6	42.3
KXG37870	Sorghum	nucleus	28.0	41.18
CDY02175	Canola	mitochondrion	51.6	38.05
KXG36643	Sorghum	mitochondrion	48.0	37.97
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	9.6	36.92
EER97356	Sorghum	plastid	19.2	36.64
KXG36665	Sorghum	mitochondrion	15.2	36.19
PGSC0003DMT400003685	Potato	nucleus	42.8	35.31
CDX87197	Canola	plastid	46.4	35.26
EES14515	Sorghum	plastid	19.6	35.0
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	9.2	34.33
Solyc02g088790.2.1	Tomato	extracellular, plastid	48.4	32.44
EES10764	Sorghum	mitochondrion	16.8	31.11
KXG37189	Sorghum	nucleus	24.4	30.65
EER92461	Sorghum	plastid	19.6	28.99
KXG26990	Sorghum	plastid	16.0	27.21
KXG24163	Sorghum	nucleus	22.8	26.15
EES02151	Sorghum	mitochondrion, plastid	14.4	24.66
OQU88590	Sorghum	nucleus	27.6	22.92
KXG37841	Sorghum	nucleus	28.0	22.15
KRH54698	Soybean	plastid	45.2	16.77
KXG30823	Sorghum	plastid	17.6	10.97

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EntrezGene:8064104	UniProt:C5YNX7	EnsemblPlants:EES16016	ProteinID:EES16016
ProteinID:EES16016.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PRINTS:PR01228	PFscan:PS50102	PANTHER:PTHR44202
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3008G103900	SUPFAM:SSF54928	unigene:Sbi.11847
UniParc:UPI0001A88333	RefSeq:XP_002442178.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:49064316..49067582

Molecular Weight (calculated)

24559.7 Da

IEP (calculated)

4.753

GRAVY (calculated)

-0.500

Length

250 amino acids

Sequence
(BLAST)

001: MALANKLGGL LKKATSSNPS VYQAIRCMSS KLFVGGLSYG TDDHSLRDEF AKYGEVIEAR IILDRESGRS RGFGFVTYTS SEEASAAITA MDGKTLDGRS
101: IRVNHANERT GGFRGSGGGG YGGGGFGGGG YGGGGGGYGG GGGGYGGGYG GNYGNRGGGG YGGGVGDYGA AGGAGGNFAA GGSNSFASSN FGADSGFGGN
201: PAGSFGGGST GADEFSGGTF GGDLSGNKND EIMEDMFKDD EPDSFADKRS

Best Arabidopsis Sequence Match ( AT4G13850.1 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGGG YGGGGGGYGG GGDGGGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.