Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 82.94 | 88.68 |
| Os12t0632000-01 | Rice | nucleus | 72.94 | 76.54 |
| EES16438 | Sorghum | nucleus | 71.76 | 73.94 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 71.76 | 73.05 |
| Solyc10g051390.1.1 | Tomato | nucleus | 50.0 | 72.03 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 71.18 | 71.18 |
| TraesCS5D01G020900.1 | Wheat | plastid | 72.35 | 70.69 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 54.71 | 69.92 |
| CDY42616 | Canola | cytosol | 64.12 | 69.43 |
| CDY41969 | Canola | cytosol | 51.18 | 67.97 |
| Bra010693.1-P | Field mustard | nucleus | 65.88 | 67.88 |
| CDX90323 | Canola | plastid | 65.88 | 67.88 |
| Bra030284.1-P | Field mustard | nucleus | 67.06 | 67.86 |
| CDY72366 | Canola | nucleus | 68.24 | 67.84 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 67.65 | 67.65 |
| CDY15876 | Canola | nucleus | 67.06 | 67.46 |
| Solyc10g051380.1.1 | Tomato | nucleus | 51.18 | 66.92 |
| AT4G39260.1 | Thale cress | nucleus | 66.47 | 66.86 |
| PGSC0003DMT400084266 | Potato | extracellular | 62.94 | 66.46 |
| KRH29453 | Soybean | nucleus | 54.71 | 66.43 |
| KRH29451 | Soybean | nucleus | 66.47 | 66.08 |
| Bra031210.1-P | Field mustard | nucleus | 65.29 | 66.07 |
| CDY70933 | Canola | nucleus | 65.29 | 66.07 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 62.94 | 66.05 |
| KRH29452 | Soybean | nucleus | 60.59 | 66.03 |
| CDY59763 | Canola | nucleus | 64.71 | 65.87 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 60.0 | 65.81 |
| Bra011869.1-P | Field mustard | cytosol | 62.35 | 65.43 |
| Bra001972.1-P | Field mustard | nucleus | 62.94 | 65.24 |
| AT2G21660.1 | Thale cress | nucleus | 67.06 | 64.77 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 58.82 | 64.52 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 60.59 | 63.58 |
| KRH29454 | Soybean | nucleus | 63.53 | 63.53 |
| Solyc01g109660.2.1 | Tomato | extracellular | 65.29 | 63.43 |
| CDY12133 | Canola | cytosol | 58.82 | 63.29 |
| CDY46213 | Canola | nucleus | 45.29 | 63.11 |
| PGSC0003DMT400001879 | Potato | cytosol | 65.29 | 63.07 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 60.0 | 62.96 |
| PGSC0003DMT400083014 | Potato | nucleus | 61.18 | 62.65 |
| PGSC0003DMT400084258 | Potato | nucleus | 61.18 | 62.65 |
| PGSC0003DMT400084290 | Potato | nucleus | 61.18 | 62.65 |
| CDX71276 | Canola | nucleus | 62.94 | 62.21 |
| KRH51528 | Soybean | nucleus | 66.47 | 62.09 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 57.65 | 62.03 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 58.82 | 61.73 |
| KRH60842 | Soybean | mitochondrion | 62.94 | 57.84 |
| Os03t0670700-01 | Rice | nucleus | 64.71 | 56.12 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 51.76 | 50.87 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 26.47 | 45.45 |
| EES01954 | Sorghum | plastid | 35.29 | 40.82 |
| KXG37189 | Sorghum | nucleus | 45.29 | 38.69 |
| OQU88096 | Sorghum | cytosol, mitochondrion, nucleus | 12.35 | 32.31 |
| KXG24163 | Sorghum | nucleus | 40.59 | 31.65 |
| EER97356 | Sorghum | plastid | 23.53 | 30.53 |
| KXG32985 | Sorghum | cytosol, mitochondrion, nucleus | 11.76 | 29.85 |
| EES16016 | Sorghum | mitochondrion | 41.18 | 28.0 |
| EES14515 | Sorghum | plastid | 22.94 | 27.86 |
| KXG36665 | Sorghum | mitochondrion | 17.06 | 27.62 |
| EES10764 | Sorghum | mitochondrion | 21.18 | 26.67 |
| OQU88590 | Sorghum | nucleus | 45.29 | 25.58 |
| EES02151 | Sorghum | mitochondrion, plastid | 21.76 | 25.34 |
| KXG37841 | Sorghum | nucleus | 43.53 | 23.42 |
| KXG36643 | Sorghum | mitochondrion | 42.94 | 23.1 |
| EER92461 | Sorghum | plastid | 22.94 | 23.08 |
| KXG26990 | Sorghum | plastid | 18.24 | 21.09 |
| KXG30823 | Sorghum | plastid | 21.18 | 8.98 |
Protein Annotations
| EnsemblPlants:KXG37870 | EnsemblPlantsGene:SORBI_3001G141300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44202 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:KXG37870 | ProteinID:KXG37870.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00016EF052 | UniProt:A0A1B6QIY5 | MapMan:16.7.2 | : |
Description
hypothetical protein
Coordinates
chr1:-:11339409..11340551
Molecular Weight (calculated)
16673.8 Da
IEP (calculated)
6.720
GRAVY (calculated)
-0.766
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAADVEYRC FVGGLAWATN NETLEQAFAN FGQVIDSKVI TDRETGRSRG FGFVTFSSEQ SMLDAIENMN GKELDGRNIT VNQAQSRGGG GGGGGYGGGG
101: GGYGGRREGG GYGGGGGGYG GRREGGGGYG GGGYGGGGGG YGGRREGGGG YGGGGGYGGN RGDSGGNWRN
101: GGYGGRREGG GYGGGGGGYG GRREGGGGYG GGGYGGGGGG YGGRREGGGG YGGGGGYGGN RGDSGGNWRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.