Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27650_001 | Banana | nucleus | 67.72 | 80.45 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 77.22 | 78.71 |
| Solyc10g051390.1.1 | Tomato | nucleus | 56.33 | 75.42 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 80.38 | 74.71 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 73.42 | 71.6 |
| Solyc10g051380.1.1 | Tomato | nucleus | 58.86 | 71.54 |
| KRH29451 | Soybean | nucleus | 74.68 | 69.01 |
| KRH29453 | Soybean | nucleus | 60.76 | 68.57 |
| KRH29452 | Soybean | nucleus | 67.09 | 67.95 |
| Bra030284.1-P | Field mustard | nucleus | 72.15 | 67.86 |
| KRH29454 | Soybean | nucleus | 72.78 | 67.65 |
| CDY15876 | Canola | nucleus | 72.15 | 67.46 |
| CDY72366 | Canola | nucleus | 72.78 | 67.25 |
| KRH51528 | Soybean | nucleus | 77.22 | 67.03 |
| Zm00001d041246_P001 | Maize | nucleus | 61.39 | 66.9 |
| CDY59763 | Canola | nucleus | 70.25 | 66.47 |
| PGSC0003DMT400083014 | Potato | nucleus | 69.62 | 66.27 |
| PGSC0003DMT400084258 | Potato | nucleus | 69.62 | 66.27 |
| PGSC0003DMT400084290 | Potato | nucleus | 69.62 | 66.27 |
| Bra031210.1-P | Field mustard | nucleus | 70.25 | 66.07 |
| CDY70933 | Canola | nucleus | 70.25 | 66.07 |
| Os12t0632000-01 | Rice | nucleus | 67.72 | 66.05 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 67.72 | 65.64 |
| PGSC0003DMT400001879 | Potato | cytosol | 72.15 | 64.77 |
| Solyc01g109660.2.1 | Tomato | extracellular | 71.52 | 64.57 |
| Zm00001d031168_P001 | Maize | plastid | 63.29 | 64.52 |
| Bra010693.1-P | Field mustard | nucleus | 67.09 | 64.24 |
| CDX90323 | Canola | plastid | 67.09 | 64.24 |
| TraesCS4A01G293000.1 | Wheat | plastid | 65.82 | 64.2 |
| CDY41969 | Canola | cytosol | 51.9 | 64.06 |
| EES16438 | Sorghum | nucleus | 66.46 | 63.64 |
| Bra001972.1-P | Field mustard | nucleus | 65.82 | 63.41 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 66.46 | 63.25 |
| CDY42616 | Canola | cytosol | 62.66 | 63.06 |
| PGSC0003DMT400084266 | Potato | extracellular | 63.92 | 62.73 |
| AT2G21660.1 | Thale cress | nucleus | 69.62 | 62.5 |
| CDY46213 | Canola | nucleus | 48.1 | 62.3 |
| KRH60842 | Soybean | mitochondrion | 72.78 | 62.16 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 65.19 | 61.68 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 62.03 | 61.64 |
| AT4G39260.1 | Thale cress | nucleus | 65.19 | 60.95 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 65.19 | 60.59 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 62.03 | 60.49 |
| CDY12133 | Canola | cytosol | 60.13 | 60.13 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 58.86 | 60.0 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 61.39 | 59.88 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 61.39 | 59.88 |
| CDX71276 | Canola | nucleus | 64.56 | 59.3 |
| Bra011869.1-P | Field mustard | cytosol | 60.76 | 59.26 |
| TraesCS5D01G020900.1 | Wheat | plastid | 65.19 | 59.2 |
| KXG37870 | Sorghum | nucleus | 62.03 | 57.65 |
| Os03t0670700-01 | Rice | nucleus | 65.19 | 52.55 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 55.7 | 50.87 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 29.11 | 46.46 |
| GSMUA_Achr7P02750_001 | Banana | mitochondrion | 36.08 | 38.0 |
| GSMUA_Achr4P16080_001 | Banana | mitochondrion | 37.34 | 31.05 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 20.25 | 30.19 |
| GSMUA_Achr4P03230_001 | Banana | mitochondrion | 46.84 | 28.91 |
| GSMUA_Achr9P07090_001 | Banana | mitochondrion | 42.41 | 28.15 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 29.75 | 27.98 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 18.99 | 27.27 |
| GSMUA_Achr11P... | Banana | mitochondrion | 22.78 | 27.27 |
| GSMUA_Achr5P26410_001 | Banana | cytosol, mitochondrion, nucleus | 19.62 | 26.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 18.35 | 26.85 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 37.34 | 26.34 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 22.15 | 25.18 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 32.28 | 24.88 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 48.1 | 24.44 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 29.11 | 24.08 |
| GSMUA_Achr8P07380_001 | Banana | mitochondrion | 19.62 | 22.96 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 24.68 | 22.16 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 46.84 | 21.45 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 20.25 | 18.82 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 21.52 | 10.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P14550_001 | EnsemblPlants:GSMUA_Achr4T14550_001 | EnsemblPlantsGene:GSMUA_Achr4G14550_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44202 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002960B41 | UniProt:M0SNX0 | MapMan:16.7.2 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G14550_001]
Coordinates
chr4:+:10869582..10870639
Molecular Weight (calculated)
16094.2 Da
IEP (calculated)
8.987
GRAVY (calculated)
-0.776
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASDVEFRC FVGGLAWATD DASLERAFST YGDIVESKII NDRETGRSRG FGFVTFRDEQ SMRDAIKGMN GQTLDGRNIT VNEAQNRRSD GGFRSGGGGY
101: GGGGGFRSGG GGYGGGGGGF RSGGGGGYGG GGGRRDGGGG YGRDRGYGGG SSDGYWRS
101: GGGGGFRSGG GGYGGGGGGF RSGGGGGYGG GGGRRDGGGG YGRDRGYGGG SSDGYWRS
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.