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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra010693.1-P Field mustard nucleus 88.61 84.85
CDX90323 Canola plastid 88.61 84.85
CDY41969 Canola cytosol 68.35 84.38
CDY42616 Canola cytosol 79.75 80.25
Solyc10g051390.1.1 Tomato nucleus 55.7 74.58
AT4G39260.1 Thale cress nucleus 79.75 74.56
Solyc10g051380.1.1 Tomato nucleus 58.23 70.77
CDY46213 Canola nucleus 53.8 69.67
CDY15876 Canola nucleus 74.05 69.23
CDY70933 Canola nucleus 73.42 69.05
CDY59763 Canola nucleus 72.78 68.86
CDY72366 Canola nucleus 73.42 67.84
GSMUA_Achr7P27650_001 Banana nucleus 55.06 65.41
TraesCS5B01G013200.1 Wheat nucleus 67.72 64.07
KRH29452 Soybean nucleus 62.66 63.46
GSMUA_Achr8P05200_001 Banana cytosol 62.03 63.23
KRH29451 Soybean nucleus 67.72 62.57
VIT_03s0063g02610.t01 Wine grape nucleus 63.92 62.35
CDX71276 Canola nucleus 67.72 62.21
PGSC0003DMT400083014 Potato nucleus 65.19 62.05
PGSC0003DMT400084258 Potato nucleus 65.19 62.05
PGSC0003DMT400084290 Potato nucleus 65.19 62.05
TraesCS5A01G015000.1 Wheat nucleus 66.46 61.76
Solyc01g109660.2.1 Tomato extracellular 68.35 61.71
PGSC0003DMT400001879 Potato cytosol 67.72 60.8
Zm00001d041246_P001 Maize nucleus 55.7 60.69
GSMUA_Achr3P30570_001 Banana plasma membrane 65.19 60.59
Os12t0632000-01 Rice nucleus 62.03 60.49
Zm00001d013568_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 60.76 60.38
GSMUA_Achr4P14550_001 Banana nucleus 60.13 60.13
TraesCS5D01G020900.1 Wheat plastid 65.82 59.77
Zm00001d031168_P001 Maize plastid 58.23 59.35
KXG37870 Sorghum nucleus 63.29 58.82
KRH51528 Soybean nucleus 67.72 58.79
KRH29453 Soybean nucleus 51.9 58.57
PGSC0003DMT400084266 Potato extracellular 59.49 58.39
TraesCS4B01G020300.1 Wheat extracellular 60.13 58.28
EES16438 Sorghum nucleus 60.76 58.18
TraesCS6D01G199100.1 Wheat nucleus 56.96 58.06
TraesCS6A01G216500.1 Wheat nucleus 59.49 58.02
TraesCS4A01G293000.1 Wheat plastid 59.49 58.02
TraesCS6B01G246400.1 Wheat nucleus 59.49 58.02
HORVU6Hr1G055440.1 Barley nucleus 58.86 57.41
TraesCS4D01G018500.1 Wheat nucleus 59.49 56.63
KRH29454 Soybean nucleus 59.49 55.29
HORVU5Hr1G002150.1 Barley nucleus 59.49 54.34
KRH60842 Soybean mitochondrion 63.29 54.05
Os03t0670700-01 Rice nucleus 58.23 46.94
HORVU5Hr1G089190.1 Barley endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 27.85 44.44
CDY53035 Canola mitochondrion 41.77 43.71
CDY47314 Canola mitochondrion 41.14 43.33
CDY47311 Canola mitochondrion 38.61 42.36
CDY06468 Canola mitochondrion 38.61 41.22
CDY08312 Canola mitochondrion 39.24 40.52
CDY26743 Canola mitochondrion 32.28 34.46
CDY19230 Canola mitochondrion 29.11 33.09
CDX82164 Canola mitochondrion 29.75 32.41
CDY51614 Canola mitochondrion 28.48 31.03
CDX82066 Canola cytosol, nucleus, plastid 17.72 29.17
CDY09244 Canola mitochondrion 18.99 28.85
CDY52166 Canola nucleus 44.3 28.81
CDY48990 Canola nucleus 44.3 28.81
CDY31588 Canola nucleus 13.92 28.21
CDX83617 Canola nucleus 41.14 28.02
CDY13632 Canola nucleus 41.77 27.62
CDX74955 Canola plastid 24.05 26.21
CDX91368 Canola plastid 24.05 26.21
CDX73070 Canola mitochondrion 43.67 25.56
CDY16825 Canola plastid 42.41 25.48
CDY14089 Canola mitochondrion 23.42 25.34
CDY04982 Canola mitochondrion 23.42 25.34
CDX96526 Canola mitochondrion 44.3 25.18
CDY28003 Canola plastid 22.78 25.0
CDY49123 Canola mitochondrion 41.77 24.81
CDY42426 Canola mitochondrion 37.97 24.79
CDY35978 Canola mitochondrion, plastid 20.89 23.08
CDY43035 Canola plastid 21.52 22.22
CDY64931 Canola plastid 21.52 22.22
CDY42466 Canola plastid 21.52 22.22
CDY43820 Canola plastid 21.52 21.66
CDX87197 Canola plastid 44.3 21.28
CDY11283 Canola nucleus 39.87 20.59
CDY02175 Canola mitochondrion 42.41 19.76
CDY31170 Canola mitochondrion, nucleus 15.82 18.94
CDX83260 Canola mitochondrion 15.82 18.66
CDY65478 Canola endoplasmic reticulum 23.42 17.79
CDY34132 Canola nucleus 28.48 17.65
CDX80910 Canola nucleus 28.48 17.24
CDX71070 Canola mitochondrion 15.82 16.45
CDY19589 Canola plastid 18.99 8.04
CDY06395 Canola nucleus 18.35 7.29
Protein Annotations
MapMan:16.7.2Gene3D:3.30.70.330GO:A0A078FJ41UniProt:A0A078FJ41EnsemblPlants:CDY12133ProteinID:CDY12133
ProteinID:CDY12133.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00061124001
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102PANTHER:PTHR45429
InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EE7B20SEG:seg
Description
BnaC03g60490DBnaC03g60490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ41]
Coordinates
chrLK032017:-:758284..760373
Molecular Weight (calculated)
15823.1 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.625
Length
158 amino acids
Sequence
(BLAST)
001: MVKILGLGYI IWSGETEYRC FVGGLAWATA DADLERTFSQ FGEVIDSKII NDRETGRSRG FGFVTFKDDK SMRDAIEEMN GKELDGRTIT VNEAQSRGGG
101: GGGRGGGGGY NRGGGGGGYG GGGGYGGGGG GYGRRDGGGY GGGDGGYGGN SGGGGGGW
Best Arabidopsis Sequence Match ( AT4G39260.3 )
(BLAST)
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.