Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 6
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82164 | Canola | mitochondrion | 89.66 | 89.66 |
| CDY42426 | Canola | mitochondrion | 73.1 | 43.8 |
| CDY19230 | Canola | mitochondrion | 37.93 | 39.57 |
| CDY06468 | Canola | mitochondrion | 40.0 | 39.19 |
| CDY49123 | Canola | mitochondrion | 71.72 | 39.1 |
| CDX73070 | Canola | mitochondrion | 72.41 | 38.89 |
| CDX96526 | Canola | mitochondrion | 73.1 | 38.13 |
| CDY08312 | Canola | mitochondrion | 40.0 | 37.91 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 72.41 | 36.33 |
| CDY47311 | Canola | mitochondrion | 35.86 | 36.11 |
| CDY47314 | Canola | mitochondrion | 37.24 | 36.0 |
| CDY26743 | Canola | mitochondrion | 36.55 | 35.81 |
| CDY53035 | Canola | mitochondrion | 37.24 | 35.76 |
| CDY65478 | Canola | endoplasmic reticulum | 51.03 | 35.58 |
| CDY46213 | Canola | nucleus | 28.28 | 33.61 |
| CDY41969 | Canola | cytosol | 28.28 | 32.03 |
| CDY04982 | Canola | mitochondrion | 31.72 | 31.51 |
| CDY14089 | Canola | mitochondrion | 31.03 | 30.82 |
| CDY59763 | Canola | nucleus | 33.1 | 28.74 |
| CDY12133 | Canola | cytosol | 31.03 | 28.48 |
| CDY15876 | Canola | nucleus | 33.1 | 28.4 |
| CDY31588 | Canola | nucleus | 15.17 | 28.21 |
| CDY70933 | Canola | nucleus | 32.41 | 27.98 |
| CDY09244 | Canola | mitochondrion | 20.0 | 27.88 |
| CDY72366 | Canola | nucleus | 31.72 | 26.9 |
| CDY42616 | Canola | cytosol | 28.97 | 26.75 |
| CDX90323 | Canola | plastid | 30.34 | 26.67 |
| CDY28003 | Canola | plastid | 26.21 | 26.39 |
| CDY16825 | Canola | plastid | 47.59 | 26.24 |
| CDX74955 | Canola | plastid | 25.52 | 25.52 |
| CDX91368 | Canola | plastid | 25.52 | 25.52 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 45.52 | 25.1 |
| CDX71276 | Canola | nucleus | 28.97 | 24.42 |
| Solyc10g081180.1.1 | Tomato | nucleus | 36.55 | 24.09 |
| CDY35978 | Canola | mitochondrion, plastid | 23.45 | 23.78 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 15.17 | 22.92 |
| CDX83260 | Canola | mitochondrion | 20.69 | 22.39 |
| CDY42466 | Canola | plastid | 23.45 | 22.22 |
| CDY31170 | Canola | mitochondrion, nucleus | 20.0 | 21.97 |
| CDX87197 | Canola | plastid | 48.97 | 21.58 |
| CDY02175 | Canola | mitochondrion | 48.97 | 20.94 |
| CDY64931 | Canola | plastid | 22.07 | 20.91 |
| CDY43035 | Canola | plastid | 22.07 | 20.91 |
| CDY43820 | Canola | plastid | 22.07 | 20.38 |
| CDX71070 | Canola | mitochondrion | 19.31 | 18.42 |
| CDX83617 | Canola | nucleus | 26.21 | 16.38 |
| CDY48990 | Canola | nucleus | 26.9 | 16.05 |
| CDY13632 | Canola | nucleus | 26.21 | 15.9 |
| CDY52166 | Canola | nucleus | 26.21 | 15.64 |
| CDY11283 | Canola | nucleus | 22.76 | 10.78 |
| CDY34132 | Canola | nucleus | 17.93 | 10.2 |
| CDY19589 | Canola | plastid | 22.07 | 8.58 |
| CDX80910 | Canola | nucleus | 14.48 | 8.05 |
| CDY06395 | Canola | nucleus | 21.38 | 7.79 |
Protein Annotations
| MapMan:16.12.5.2 | Gene3D:3.30.70.330 | GO:A0A078IQF3 | UniProt:A0A078IQF3 | EnsemblPlants:CDY51614 | ProteinID:CDY51614 |
| ProteinID:CDY51614.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00003846001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45502 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE8A9D | SEG:seg |
Description
BnaC02g45880DBnaC02g45880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQF3]
Coordinates
chrLK033012:+:68039..69058
Molecular Weight (calculated)
16152.2 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.133
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFLSKVGRI FRQTSNYVTV SNLILQSISS SKIFVGGDYN SISVFGLREA FRKYGQVVDA KIIVDRETGR SRGFAFVTFT SNQEATNAMQ LDRQHLHGRI
101: IRVNFATERG SGFGGRGFRG PSGGAVFYDD PLPCGYVYDF SVWCH
101: IRVNFATERG SGFGGRGFRG PSGGAVFYDD PLPCGYVYDF SVWCH
001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA
Arabidopsis Description
RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.