Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g116320.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18630.1 | Solyc03g116320.2.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 94.09 | 78.71 |
| Solyc10g051390.1.1 | Tomato | nucleus | 30.0 | 55.93 |
| Solyc10g051380.1.1 | Tomato | nucleus | 30.91 | 52.31 |
| Solyc09g092320.2.1 | Tomato | mitochondrion, nucleus | 25.0 | 47.41 |
| Solyc01g109660.2.1 | Tomato | extracellular | 36.36 | 45.71 |
| Solyc02g066930.2.1 | Tomato | nucleus | 44.09 | 44.91 |
| Solyc05g053780.2.1 | Tomato | mitochondrion | 32.73 | 44.72 |
| AT1G18630.1 | Thale cress | mitochondrion | 29.09 | 41.29 |
| CDX82164 | Canola | mitochondrion | 26.82 | 40.69 |
| Bra008142.1-P | Field mustard | mitochondrion | 47.27 | 39.39 |
| CDY49123 | Canola | mitochondrion | 47.27 | 39.1 |
| CDY26743 | Canola | mitochondrion | 25.91 | 38.51 |
| CDX96526 | Canola | mitochondrion | 48.18 | 38.13 |
| CDY42426 | Canola | mitochondrion | 41.82 | 38.02 |
| Bra015926.1-P | Field mustard | mitochondrion | 48.64 | 37.54 |
| CDX73070 | Canola | mitochondrion | 45.91 | 37.41 |
| CDY51614 | Canola | mitochondrion | 24.09 | 36.55 |
| Bra025674.1-P | Field mustard | mitochondrion | 24.09 | 36.55 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 47.27 | 35.99 |
| CDY19230 | Canola | mitochondrion | 22.27 | 35.25 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 16.82 | 34.91 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 20.45 | 31.91 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 18.64 | 31.78 |
| Solyc07g063900.2.1 | Tomato | plastid | 21.36 | 31.13 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 15.45 | 30.63 |
| TraesCS3D01G539400.1 | Wheat | mitochondrion | 15.0 | 30.28 |
| VIT_05s0094g00380.t01 | Wine grape | mitochondrion | 15.0 | 30.0 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 14.55 | 29.36 |
| Solyc02g088790.2.1 | Tomato | extracellular, plastid | 49.09 | 28.95 |
| Zm00001d041949_P001 | Maize | mitochondrion | 14.09 | 28.7 |
| TraesCS3B01G610900.1 | Wheat | mitochondrion | 14.09 | 28.44 |
| Os01t0974701-01 | Rice | mitochondrion | 14.55 | 27.59 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 15.0 | 27.05 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 16.82 | 26.81 |
| EES02151 | Sorghum | mitochondrion, plastid | 17.73 | 26.71 |
| Solyc09g011210.2.1 | Tomato | plastid | 15.91 | 26.52 |
| KRH24829 | Soybean | mitochondrion | 17.27 | 26.03 |
| Solyc10g047130.1.1 | Tomato | nucleus | 28.18 | 25.94 |
| Solyc06g035610.2.1 | Tomato | mitochondrion | 16.36 | 25.0 |
| KRH24832 | Soybean | endoplasmic reticulum | 15.91 | 24.82 |
| Bra008020.1-P | Field mustard | endoplasmic reticulum | 23.18 | 24.52 |
| CDY65478 | Canola | endoplasmic reticulum | 23.18 | 24.52 |
| Solyc03g071560.2.1 | Tomato | nucleus | 30.91 | 21.66 |
| Solyc01g104840.2.1 | Tomato | nucleus | 21.82 | 21.52 |
| Solyc11g008210.1.1 | Tomato | nucleus | 23.64 | 17.63 |
| KRH40931 | Soybean | mitochondrion | 16.82 | 16.02 |
| Solyc11g007160.1.1 | Tomato | plastid | 17.27 | 9.5 |
Protein Annotations
| MapMan:16.12.5.2 | MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4D305 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44202 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc10g081180.1 | EnsemblPlants:Solyc10g081180.1.1 | UniParc:UPI000276978E | SEG:seg |
Description
No Description!
Coordinates
chr10:+:62309644..62311433
Molecular Weight (calculated)
22200.1 Da
IEP (calculated)
4.054
GRAVY (calculated)
-0.753
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKLFVGGI SWNTNDNSLQ EAFSKYGEVV EARIIYDRES GRSRGFGFVT FNTSEDASAA IQALDGQELD GRRIRVNVAN DRTRGYGGGY GGGNFGGGGG
101: YGGGGNYGSG GYGGGGGNYG SGGGNYGASG YGSSGNYGSA GGVDANIASS YGSGESNFGF GTSGDNYASG STDAAASNSF SFGNDTTSNQ AEASDVNSPV
201: DAGENYRDDN DSNDYADRRA
101: YGGGGNYGSG GYGGGGGNYG SGGGNYGASG YGSSGNYGSA GGVDANIASS YGSGESNFGF GTSGDNYASG STDAAASNSF SFGNDTTSNQ AEASDVNSPV
201: DAGENYRDDN DSNDYADRRA
001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA
Arabidopsis Description
RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.