Factsheet for Solyc11g007160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050134	Potato	plastid	93.5	93.5
GSMUA_Achr2P01230_001	Banana	nucleus	50.75	65.06
VIT_13s0106g00500.t01	Wine grape	plastid	59.75	58.44
KRG92035	Soybean	plastid	56.5	57.95
Bra031244.1-P	Field mustard	plastid	49.5	53.08
CDY19589	Canola	plastid	49.5	53.08
AT3G20930.2	Thale cress	plastid	49.5	52.24
CDY06395	Canola	nucleus	50.75	51.01
TraesCS6D01G273200.1	Wheat	plastid	48.75	50.0
TraesCS6B01G322400.1	Wheat	plastid	48.5	50.0
TraesCS6A01G292000.1	Wheat	plastid	48.25	49.74
Os02t0730800-01	Rice	plastid	48.0	48.12
KXG30823	Sorghum	plastid	48.0	47.88
Zm00001d017930_P003	Maize	plastid	44.75	43.55
Solyc10g083240.1.1	Tomato	mitochondrion	12.0	37.21
Solyc10g084630.1.1	Tomato	mitochondrion	12.0	34.78
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	9.25	31.9
Solyc09g011210.2.1	Tomato	plastid	10.5	31.82
Solyc07g063900.2.1	Tomato	plastid	10.75	28.48
Solyc10g051390.1.1	Tomato	nucleus	8.0	27.12
Solyc06g035610.2.1	Tomato	mitochondrion	9.5	26.39
Solyc07g049270.2.1	Tomato	mitochondrion	8.5	24.11
Solyc10g051380.1.1	Tomato	nucleus	7.75	23.85
Solyc05g053780.2.1	Tomato	mitochondrion	8.75	21.74
Solyc01g109660.2.1	Tomato	extracellular	8.5	19.43
Solyc10g081180.1.1	Tomato	nucleus	9.5	17.27
Solyc02g066930.2.1	Tomato	nucleus	9.0	16.67
Solyc01g104840.2.1	Tomato	nucleus	8.5	15.25
Solyc10g047130.1.1	Tomato	nucleus	9.0	15.06
Solyc02g088790.2.1	Tomato	extracellular, plastid	9.5	10.19
Solyc03g071560.2.1	Tomato	nucleus	7.5	9.55
Solyc11g008210.1.1	Tomato	nucleus	4.0	5.42

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	InterPro:IPR000504
InterPro:IPR012677	UniProt:K4D4X7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR31346
PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc11g007160.1
EnsemblPlants:Solyc11g007160.1.1	UniParc:UPI000276A0F3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:1598359..1601773

Molecular Weight (calculated)

43773.8 Da

IEP (calculated)

4.931

GRAVY (calculated)

-0.224

Length

400 amino acids

Sequence
(BLAST)

001: MEVTLPHSSS SALSIISTLS AKTLKPHFKF TLILPDKSSR SLFSSEFCCT CVISRNRATS ITASSSSITS IYPSLPNSTS TQSHWMVLME TPPNGVSSKI
101: EVIDYYVETL ERVLGSEEDA QMCIYNASCN PPYGFCCDID DAVADEIAGM PGVLSVIPDP DFDSMVKDYS YTNGQLSSPS TSYTEGSSLF PPGTSKHWLV
201: RMARPSVGVI RKGPMVDYYV QVLTKVLGNE KDAQMCLYHV SWQANYGFCC ELDEACAQEL AGVPGVLSVQ PDENFDSDNK DYGGGNLKLS VDSQESTASK
301: EETDVRTKKL FVTGLSFYTS EKTLRAAFEG YGELVEVKII MDKISKRSKG YAFIEYTTLE AASAALKEMN GKIINGWMIT VDVAKTNPPK YSKGRPGTTR

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.