CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01230_001	Banana	nucleus	52.82	66.03
VIT_13s0106g00500.t01	Wine grape	plastid	63.08	60.15
Bra031244.1-P	Field mustard	plastid	55.38	57.91
CDY19589	Canola	plastid	54.87	57.37
Solyc11g007160.1.1	Tomato	plastid	57.95	56.5
PGSC0003DMT400050134	Potato	plastid	57.95	56.5
AT3G20930.2	Thale cress	plastid	54.36	55.94
CDY06395	Canola	nucleus	55.9	54.77
TraesCS6B01G322400.1	Wheat	plastid	51.28	51.55
TraesCS6A01G292000.1	Wheat	plastid	51.03	51.29
TraesCS6D01G273200.1	Wheat	plastid	50.77	50.77
Os02t0730800-01	Rice	plastid	49.74	48.62
KXG30823	Sorghum	plastid	49.23	47.88
Zm00001d017930_P003	Maize	plastid	46.67	44.28
KRH23034	Soybean	mitochondrion	8.72	39.53
KRH67547	Soybean	mitochondrion	13.08	36.69
KRH77758	Soybean	mitochondrion	10.51	36.28
KRG95817	Soybean	mitochondrion	12.56	35.25
KRH10291	Soybean	nucleus	6.67	35.14
KRH67959	Soybean	mitochondrion	11.28	33.85
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	8.21	32.99
KRH24829	Soybean	mitochondrion	11.79	31.51
KRH25927	Soybean	mitochondrion, plastid	10.77	28.97
KRH55574	Soybean	mitochondrion, plastid	10.77	28.97
KRH24832	Soybean	endoplasmic reticulum	10.26	28.37
KRH09475	Soybean	plastid	13.08	28.33
KRG97345	Soybean	mitochondrion	10.0	27.66
KRH17905	Soybean	cytosol, mitochondrion, nucleus	5.13	24.1
KRH31570	Soybean	mitochondrion	8.72	23.45
KRH38934	Soybean	plastid	8.97	22.73
KRH50325	Soybean	vacuole	7.95	22.14
KRH29453	Soybean	nucleus	7.69	21.43
KRH40931	Soybean	mitochondrion	11.79	19.91
KRH42209	Soybean	endoplasmic reticulum	8.97	19.89
KRH29452	Soybean	nucleus	7.95	19.87
KRH29451	Soybean	nucleus	8.21	18.71
KRH51528	Soybean	nucleus	8.72	18.68
KRH29454	Soybean	nucleus	7.95	18.24
KRH60842	Soybean	mitochondrion	8.46	17.84
KRH58335	Soybean	nucleus	8.72	16.35
KRH01278	Soybean	mitochondrion, nucleus, plastid	10.0	15.98
KRH45033	Soybean	nucleus, plastid	9.74	15.51
KRH56813	Soybean	mitochondrion	9.74	13.87
KRH03133	Soybean	nucleus	9.74	13.82
KRG90774	Soybean	nucleus	6.67	9.32
KRH35987	Soybean	nucleus	5.64	7.61
KRH54698	Soybean	plastid	8.97	5.19

Protein Annotations

EntrezGene:100791652	MapMan:16.12.5.2	Gene3D:3.30.70.330	EMBL:ACUP02012724	EnsemblPlantsGene:GLYMA_20G187000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016554	GO:GO:0055085	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7N4C7	EnsemblPlants:KRG92035
ProteinID:KRG92035	ProteinID:KRG92035.1	ProteinID:KRG92036.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000294A7C0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:42552946..42557041

Molecular Weight (calculated)

43313.4 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.310

Length

390 amino acids

Sequence
(BLAST)

001: MELLSVSVSL SKCQTLSFPK PKAPQIHELP LNIRLPNKTN HFSLSSSSSP CCNWSITRVA AATTYPSFNP STTQNPHWMV LMDTPPQGVN SKPQVIDYYV
101: KTLQTVLGSE KDAQMCIYDA SWNTHFGFCC DIDEEISAQL ASLPEVLLVR PDLEFNSLKK DYSLSSGEAG HLSGLRTRTN MLFPAGNSKH WLVKMDKPGV
201: EAVTKAQIVD YYAQILTKVM GNEKDAQMCI YHVSWKTNFG FCCELDEDCA QELAGVLGVL SVQPDNNFES ENKDYAGSNL ENSWNVSNSS EASQEAPLKT
301: KKLFVTGLSF YTSEKTLRAA FEGFGELVEV KVIMDKISKR SKGYAFVEYT TEEAASAALK EMNGKIINGW MIVVDVAKPN PPRYHRNHAG

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.