CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083240.1.1	Tomato	mitochondrion	66.15	66.67
PGSC0003DMT400072597	Potato	mitochondrion	66.15	66.67
VIT_08s0007g02860.t01	Wine grape	mitochondrion	66.92	65.41
Bra028739.1-P	Field mustard	mitochondrion	60.77	54.11
CDY04982	Canola	mitochondrion	60.77	54.11
CDY14089	Canola	mitochondrion	60.77	54.11
EES10764	Sorghum	mitochondrion	55.38	53.33
AT5G06210.1	Thale cress	mitochondrion	59.23	52.74
TraesCS2D01G294000.1	Wheat	mitochondrion	53.08	49.64
TraesCS2B01G312500.1	Wheat	mitochondrion	52.31	48.92
TraesCS2A01G296100.1	Wheat	mitochondrion	52.31	48.92
Os04t0414300-00	Rice	mitochondrion	51.54	48.91
KRH23034	Soybean	mitochondrion	30.77	46.51
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	46.15	44.12
KRH77758	Soybean	mitochondrion	36.92	42.48
KRH10291	Soybean	nucleus	23.08	40.54
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	30.0	40.21
KRH67547	Soybean	mitochondrion	41.54	38.85
KRG95817	Soybean	mitochondrion	40.77	38.13
KRH25927	Soybean	mitochondrion, plastid	37.69	33.79
KRH55574	Soybean	mitochondrion, plastid	36.92	33.1
KRG97345	Soybean	mitochondrion	33.08	30.5
KRH17905	Soybean	cytosol, mitochondrion, nucleus	18.46	28.92
KRH29453	Soybean	nucleus	30.77	28.57
KRH09475	Soybean	plastid	37.69	27.22
KRH29452	Soybean	nucleus	32.31	26.92
KRH31570	Soybean	mitochondrion	28.46	25.52
KRH50325	Soybean	vacuole	26.92	25.0
KRH24829	Soybean	mitochondrion	27.69	24.66
KRH24832	Soybean	endoplasmic reticulum	26.15	24.11
KRH29451	Soybean	nucleus	31.54	23.98
KRH29454	Soybean	nucleus	30.0	22.94
KRH42209	Soybean	endoplasmic reticulum	30.0	22.16
KRH60842	Soybean	mitochondrion	30.77	21.62
KRH51528	Soybean	nucleus	29.23	20.88
KRH38934	Soybean	plastid	23.85	20.13
KRH01278	Soybean	mitochondrion, nucleus, plastid	35.38	18.85
KRH58335	Soybean	nucleus	30.0	18.75
KRH45033	Soybean	nucleus, plastid	34.62	18.37
KRH03133	Soybean	nucleus	35.38	16.73
KRH56813	Soybean	mitochondrion	34.62	16.42
KRH40931	Soybean	mitochondrion	27.69	15.58
KRG90774	Soybean	nucleus	27.69	12.9
KRG92035	Soybean	plastid	33.85	11.28
KRH35987	Soybean	nucleus	21.54	9.69
KRH54698	Soybean	plastid	30.77	5.93

Protein Annotations

EntrezGene:100527079	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02002094	EMBL:BT091893	UniProt:C6T383
EnsemblPlantsGene:GLYMA_03G198500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:1901002	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH67959
ProteinID:KRH67959	ProteinID:KRH67959.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502
PANTHER:PTHR45502:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001B153B4

Description

hypothetical protein

Coordinates

chr3:+:40774037..40775804

Molecular Weight (calculated)

14306.0 Da

IEP (calculated)

9.467

GRAVY (calculated)

-0.262

Length

130 amino acids

Sequence
(BLAST)

001: MAAVRKIIEV NRNKILSPSL LSFRRGIAYK LFVGGLSFYT TENALSEAFS NYGQVIEAKI VTDRVSDRSK GFGFVTFASQ DEAENAIEDM KGKTLNGRVI
101: FVDYAKPNIN TRGEIPIARG PPEPTSTPDT

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.