Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
nucleus: 27291164 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 78.36 | 82.72 |
| KRH29453 | Soybean | nucleus | 66.67 | 81.43 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 62.57 | 80.45 |
| KRH51528 | Soybean | nucleus | 84.8 | 79.67 |
| KRH60842 | Soybean | mitochondrion | 84.21 | 77.84 |
| KRH29452 | Soybean | nucleus | 69.59 | 76.28 |
| Solyc10g051380.1.1 | Tomato | nucleus | 57.89 | 76.15 |
| Bra030284.1-P | Field mustard | nucleus | 74.27 | 75.6 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 68.42 | 75.48 |
| Solyc10g051390.1.1 | Tomato | nucleus | 52.05 | 75.42 |
| CDY15876 | Canola | nucleus | 74.27 | 75.15 |
| Solyc01g109660.2.1 | Tomato | extracellular | 76.61 | 74.86 |
| CDY59763 | Canola | nucleus | 73.1 | 74.85 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 69.01 | 74.68 |
| PGSC0003DMT400001879 | Potato | cytosol | 76.61 | 74.43 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 73.68 | 74.12 |
| CDY42616 | Canola | cytosol | 67.84 | 73.89 |
| CDY70933 | Canola | nucleus | 72.51 | 73.81 |
| Bra031210.1-P | Field mustard | nucleus | 72.51 | 73.81 |
| CDY72366 | Canola | nucleus | 73.68 | 73.68 |
| KRH29454 | Soybean | nucleus | 73.1 | 73.53 |
| CDY41969 | Canola | cytosol | 53.8 | 71.88 |
| PGSC0003DMT400084258 | Potato | nucleus | 69.01 | 71.08 |
| PGSC0003DMT400084290 | Potato | nucleus | 69.01 | 71.08 |
| PGSC0003DMT400083014 | Potato | nucleus | 69.01 | 71.08 |
| Os12t0632000-01 | Rice | nucleus | 67.25 | 70.99 |
| CDX90323 | Canola | plastid | 68.42 | 70.91 |
| Bra010693.1-P | Field mustard | nucleus | 68.42 | 70.91 |
| AT2G21660.1 | Thale cress | nucleus | 72.51 | 70.45 |
| Zm00001d041246_P001 | Maize | nucleus | 59.65 | 70.34 |
| Zm00001d031168_P001 | Maize | plastid | 63.74 | 70.32 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 68.42 | 70.06 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 64.91 | 69.81 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 65.5 | 69.14 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 62.57 | 69.03 |
| Bra011869.1-P | Field mustard | cytosol | 64.91 | 68.52 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 64.91 | 68.52 |
| EES16438 | Sorghum | nucleus | 66.08 | 68.48 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 64.91 | 68.1 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 64.33 | 67.9 |
| TraesCS4A01G293000.1 | Wheat | plastid | 64.33 | 67.9 |
| CDY12133 | Canola | cytosol | 62.57 | 67.72 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 67.25 | 67.65 |
| AT4G39260.1 | Thale cress | nucleus | 66.67 | 67.46 |
| TraesCS5D01G020900.1 | Wheat | plastid | 68.42 | 67.24 |
| PGSC0003DMT400084266 | Potato | extracellular | 63.16 | 67.08 |
| KXG37870 | Sorghum | nucleus | 66.08 | 66.47 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 64.33 | 66.27 |
| Bra001972.1-P | Field mustard | nucleus | 63.16 | 65.85 |
| CDY46213 | Canola | nucleus | 46.78 | 65.57 |
| CDX71276 | Canola | nucleus | 63.16 | 62.79 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 54.39 | 53.76 |
| Os03t0670700-01 | Rice | nucleus | 59.65 | 52.04 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.07 | 48.48 |
| KRH42209 | Soybean | endoplasmic reticulum | 39.18 | 38.07 |
| KRH58335 | Soybean | nucleus | 42.69 | 35.1 |
| KRG97345 | Soybean | mitochondrion | 28.66 | 34.75 |
| KRH10291 | Soybean | nucleus | 14.62 | 33.78 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 18.71 | 32.99 |
| KRH23034 | Soybean | mitochondrion | 16.37 | 32.56 |
| KRH67959 | Soybean | mitochondrion | 23.98 | 31.54 |
| KRH17905 | Soybean | cytosol, mitochondrion, nucleus | 15.2 | 31.33 |
| KRG90774 | Soybean | nucleus | 50.29 | 30.82 |
| KRH77758 | Soybean | mitochondrion | 19.88 | 30.09 |
| KRH67547 | Soybean | mitochondrion | 23.98 | 29.5 |
| KRG95817 | Soybean | mitochondrion | 23.98 | 29.5 |
| KRH03133 | Soybean | nucleus | 46.78 | 29.09 |
| KRH01278 | Soybean | mitochondrion, nucleus, plastid | 40.35 | 28.28 |
| KRH45033 | Soybean | nucleus, plastid | 39.77 | 27.76 |
| KRH31570 | Soybean | mitochondrion | 23.39 | 27.59 |
| KRH56813 | Soybean | mitochondrion | 43.86 | 27.37 |
| KRH50325 | Soybean | vacuole | 22.22 | 27.14 |
| KRH24829 | Soybean | mitochondrion | 22.81 | 26.71 |
| KRH24832 | Soybean | endoplasmic reticulum | 21.05 | 25.53 |
| KRH35987 | Soybean | nucleus | 41.52 | 24.57 |
| KRH55574 | Soybean | mitochondrion, plastid | 19.3 | 22.76 |
| KRH25927 | Soybean | mitochondrion, plastid | 18.71 | 22.07 |
| KRH09475 | Soybean | plastid | 20.47 | 19.44 |
| KRH40931 | Soybean | mitochondrion | 22.81 | 16.88 |
| KRH38934 | Soybean | plastid | 14.04 | 15.58 |
| KRH54698 | Soybean | plastid | 49.12 | 12.46 |
| KRG92035 | Soybean | plastid | 18.71 | 8.21 |
Protein Annotations
| EntrezGene:100796543 | MapMan:16.7.2 | Gene3D:3.30.70.330 | EMBL:ACUP02006801 | EnsemblPlantsGene:GLYMA_11G117300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K7LP96 |
| EnsemblPlants:KRH29451 | ProteinID:KRH29451 | ProteinID:KRH29451.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44993 | PANTHER:PTHR44993:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00023CCABA | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:8927256..8928299
Molecular Weight (calculated)
16616.6 Da
IEP (calculated)
5.239
GRAVY (calculated)
-0.827
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDVEYRC FVGGLAWATD DQALERAFSQ YGEIVETKII NDRETGRSRG FGFVTFASEQ SMKDAIEGMN GQNLDGRNIT VNEAQSRGGG GGGGGGGGGY
101: GGGRGGGYGG GGRGGGGGYN RSGGGGGYGG GGGYGGGGGG GYGGGRDRGY GGGGDRGYSR GGDGGDGGWR N
101: GGGRGGGYGG GGRGGGGGYN RSGGGGGYGG GGGYGGGGGG GYGGGRDRGY GGGGDRGYSR GGDGGDGGWR N
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.