Factsheet for Bra011869.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41969	Canola	cytosol	74.69	94.53
CDY42616	Canola	cytosol	89.51	92.36
Bra010693.1-P	Field mustard	nucleus	85.8	84.24
AT4G39260.1	Thale cress	nucleus	82.72	79.29
Solyc10g051390.1.1	Tomato	nucleus	55.56	76.27
Bra030284.1-P	Field mustard	nucleus	76.54	73.81
Bra031210.1-P	Field mustard	nucleus	75.93	73.21
VIT_03s0063g02610.t01	Wine grape	nucleus	69.75	69.75
Solyc10g051380.1.1	Tomato	nucleus	55.56	69.23
Bra001972.1-P	Field mustard	nucleus	69.75	68.9
PGSC0003DMT400084266	Potato	extracellular	67.28	67.7
PGSC0003DMT400083014	Potato	nucleus	67.9	66.27
PGSC0003DMT400084258	Potato	nucleus	67.9	66.27
PGSC0003DMT400084290	Potato	nucleus	67.9	66.27
Zm00001d041246_P001	Maize	nucleus	59.26	66.21
KRH29453	Soybean	nucleus	56.17	65.0
KRH29451	Soybean	nucleus	68.52	64.91
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	62.96	64.15
TraesCS5B01G013200.1	Wheat	nucleus	66.05	64.07
Solyc01g109660.2.1	Tomato	extracellular	69.14	64.0
GSMUA_Achr7P27650_001	Banana	nucleus	52.47	63.91
TraesCS4B01G020300.1	Wheat	extracellular	64.2	63.8
TraesCS4A01G293000.1	Wheat	plastid	63.58	63.58
Zm00001d031168_P001	Maize	plastid	60.49	63.23
GSMUA_Achr8P05200_001	Banana	cytosol	60.49	63.23
PGSC0003DMT400001879	Potato	cytosol	68.52	63.07
Os12t0632000-01	Rice	nucleus	62.96	62.96
KRH51528	Soybean	nucleus	70.37	62.64
EES16438	Sorghum	nucleus	63.58	62.42
KXG37870	Sorghum	nucleus	65.43	62.35
KRH29452	Soybean	nucleus	59.88	62.18
TraesCS5D01G020900.1	Wheat	plastid	66.67	62.07
TraesCS4D01G018500.1	Wheat	nucleus	63.58	62.05
TraesCS5A01G015000.1	Wheat	nucleus	64.81	61.76
TraesCS6A01G216500.1	Wheat	nucleus	61.11	61.11
GSMUA_Achr4P14550_001	Banana	nucleus	59.26	60.76
GSMUA_Achr3P30570_001	Banana	plasma membrane	63.58	60.59
TraesCS6B01G246400.1	Wheat	nucleus	60.49	60.49
TraesCS6D01G199100.1	Wheat	nucleus	57.41	60.0
HORVU6Hr1G055440.1	Barley	nucleus	59.88	59.88
KRH29454	Soybean	nucleus	61.11	58.24
KRH60842	Soybean	mitochondrion	65.43	57.3
HORVU5Hr1G002150.1	Barley	nucleus	54.94	51.45
Os03t0670700-01	Rice	nucleus	58.02	47.96
Bra013997.1-P	Field mustard	mitochondrion	41.98	46.9
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.4	46.46
Bra037056.1-P	Field mustard	mitochondrion	40.74	44.0
Bra025674.1-P	Field mustard	mitochondrion	31.48	35.17
Bra014000.1-P	Field mustard	mitochondrion	45.68	33.33
Bra002976.1-P	Field mustard	mitochondrion	20.37	31.73
Bra032933.1-P	Field mustard	nucleus	45.06	30.04
Bra025205.1-P	Field mustard	nucleus	42.59	29.74
Bra008142.1-P	Field mustard	mitochondrion	46.3	28.41
Bra020279.1-P	Field mustard	mitochondrion	19.14	28.18
Bra015926.1-P	Field mustard	mitochondrion	46.91	26.67
Bra005189.1-P	Field mustard	plastid	23.46	26.39
Bra008100.1-P	Field mustard	cytosol	12.96	25.61
Bra035944.1-P	Field mustard	plastid	39.51	24.33
Bra028739.1-P	Field mustard	mitochondrion	21.6	23.97
Bra012986.1-P	Field mustard	mitochondrion	44.44	23.61
Bra029020.1-P	Field mustard	plastid	22.22	23.53
Bra029692.1-P	Field mustard	mitochondrion	20.37	23.08
Bra005798.1-P	Field mustard	nucleus	39.51	20.91
Bra008020.1-P	Field mustard	endoplasmic reticulum	23.46	18.27
Bra000516.1-P	Field mustard	mitochondrion	14.81	17.91
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	18.52	11.67
Bra031244.1-P	Field mustard	plastid	18.52	8.04

Protein Annotations

EnsemblPlants:Bra011869.1	EnsemblPlants:Bra011869.1-P	EnsemblPlantsGene:Bra011869	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002545E86	UniProt:M4D5W2	MapMan:16.7.2	:	:	:

Description

AT4G39260 (E=2e-038) CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA01:-:141252..142017

Molecular Weight (calculated)

15825.9 Da

IEP (calculated)

5.307

GRAVY (calculated)

-0.794

Length

162 amino acids

Sequence
(BLAST)

001: MSAEVEYRCF VGGLAWATGD AELERTFSQF GEVIDSKIIN DRETGRSRGF GFVTFKDEKS MRDAIDEMNG KELDGRTITV NEAQSRGSGG GGGRGGGGYG
101: GRGGGGYGGG GGGYGDRRGG GGYGSGGGGR GGGGYGGGGG YGGGGGRREG GGDGGYGGGG GW

Best Arabidopsis Sequence Match ( AT4G39260.3 )
(BLAST)

1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW

Arabidopsis Description

RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.