Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G246400.1 | Wheat | nucleus | 98.15 | 98.15 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 93.83 | 98.06 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 97.53 | 97.53 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 56.17 | 68.42 |
| Bra030284.1-P | Field mustard | nucleus | 69.75 | 67.26 |
| CDY15876 | Canola | nucleus | 69.75 | 66.86 |
| CDY72366 | Canola | nucleus | 69.14 | 65.5 |
| Bra031210.1-P | Field mustard | nucleus | 67.9 | 65.48 |
| CDY70933 | Canola | nucleus | 67.9 | 65.48 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 65.43 | 65.43 |
| CDY59763 | Canola | nucleus | 67.28 | 65.27 |
| Solyc10g051390.1.1 | Tomato | nucleus | 47.53 | 65.25 |
| Bra010693.1-P | Field mustard | nucleus | 66.05 | 64.85 |
| CDX90323 | Canola | plastid | 66.05 | 64.85 |
| CDY41969 | Canola | cytosol | 51.23 | 64.84 |
| Os12t0632000-01 | Rice | nucleus | 64.81 | 64.81 |
| CDY42616 | Canola | cytosol | 62.35 | 64.33 |
| KRH29451 | Soybean | nucleus | 67.9 | 64.33 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 61.11 | 63.87 |
| KRH29453 | Soybean | nucleus | 54.32 | 62.86 |
| Zm00001d041246_P001 | Maize | nucleus | 56.17 | 62.76 |
| AT2G21660.1 | Thale cress | nucleus | 67.9 | 62.5 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 61.11 | 62.26 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 59.88 | 61.39 |
| EES16438 | Sorghum | nucleus | 62.35 | 61.21 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 64.2 | 61.18 |
| Zm00001d031168_P001 | Maize | plastid | 58.02 | 60.65 |
| Solyc01g109660.2.1 | Tomato | extracellular | 65.43 | 60.57 |
| KRH51528 | Soybean | nucleus | 67.9 | 60.44 |
| Bra001972.1-P | Field mustard | nucleus | 61.11 | 60.37 |
| AT4G39260.1 | Thale cress | nucleus | 62.96 | 60.35 |
| PGSC0003DMT400001879 | Potato | cytosol | 65.43 | 60.23 |
| Bra011869.1-P | Field mustard | cytosol | 59.88 | 59.88 |
| PGSC0003DMT400084266 | Potato | extracellular | 58.64 | 59.01 |
| KRH29452 | Soybean | nucleus | 56.79 | 58.97 |
| CDY12133 | Canola | cytosol | 57.41 | 58.86 |
| KXG37870 | Sorghum | nucleus | 61.73 | 58.82 |
| Solyc10g051380.1.1 | Tomato | nucleus | 46.91 | 58.46 |
| KRH60842 | Soybean | mitochondrion | 66.05 | 57.84 |
| KRH29454 | Soybean | nucleus | 60.49 | 57.65 |
| CDY46213 | Canola | nucleus | 43.21 | 57.38 |
| CDX71276 | Canola | nucleus | 60.49 | 56.98 |
| PGSC0003DMT400084258 | Potato | nucleus | 57.41 | 56.02 |
| PGSC0003DMT400084290 | Potato | nucleus | 57.41 | 56.02 |
| PGSC0003DMT400083014 | Potato | nucleus | 57.41 | 56.02 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 54.32 | 50.87 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 25.31 | 41.41 |
| HORVU3Hr1G093400.1 | Barley | plastid | 41.98 | 40.48 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 44.44 | 31.3 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 20.99 | 27.87 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 21.6 | 25.74 |
| HORVU5Hr1G110370.1 | Barley | mitochondrion | 45.68 | 25.26 |
| HORVU3Hr1G094330.2 | Barley | mitochondrion | 45.06 | 23.86 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 44.44 | 23.08 |
| HORVU2Hr1G042560.2 | Barley | mitochondrion | 22.84 | 22.29 |
| HORVU4Hr1G059000.4 | Barley | plastid | 24.07 | 20.21 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G055440.1 | EnsemblPlantsGene:HORVU6Hr1G055440 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45040 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000277AD54 | UniProt:A0A287U8L9 | MapMan:16.7.2 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:352480530..352481664
Molecular Weight (calculated)
16548.6 Da
IEP (calculated)
4.802
GRAVY (calculated)
-0.917
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESDGAEYR CFVGSLSWNT DDRGLEAAFS SFGEILDAKI INDRETGRSR GFGFVSFSNE QAMQDAIEGM NGKELDGRSI VVNEAQSRGY GGGGGGRYGG
101: GGGGGGGRYG GGGAYGQRRD DGYGDDGYGG GRGYGGGRYG GGRGYGGRRD GGYGRGGNSD GY
101: GGGGGGGRYG GGGAYGQRRD DGYGDDGYGG GRGYGGGRYG GGRGYGGRRD GGYGRGGNSD GY
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.