Factsheet for HORVU2Hr1G060070.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
MultiLoc:	peroxisome
Predotar:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G049220.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	HORVU7Hr1G049220.10	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P22900_001	Banana	peroxisome	54.14	55.19
HORVU2Hr1G060010.5	Barley	peroxisome	99.36	41.82
HORVU0Hr1G013900.4	Barley	peroxisome	61.15	29.36
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	60.51	25.89
Solyc07g056540.2.1	Tomato	plastid	60.51	25.61
PGSC0003DMT400071115	Potato	cytosol	60.51	25.61
KRH43857	Soybean	peroxisome	59.24	25.07
AT3G14420.1	Thale cress	peroxisome	57.96	24.8
VIT_10s0003g03830.t01	Wine grape	peroxisome	58.6	24.73
KRH13608	Soybean	nucleus	57.96	24.53
VIT_19s0093g00510.t01	Wine grape	peroxisome	57.96	24.53
AT3G14415.2	Thale cress	peroxisome	57.32	24.13
HORVU2Hr1G030930.2	Barley	peroxisome	52.23	22.4
CDY52449	Canola	mitochondrion	19.75	14.22
Bra035032.1-P	Field mustard	mitochondrion	19.75	14.22
CDX86782	Canola	cytosol, peroxisome, plastid	19.75	13.9
CDY70372	Canola	cytosol, mitochondrion, plastid	7.01	9.4
CDX88442	Canola	cytosol, mitochondrion, plastid	7.01	9.4
HORVU6Hr1G051600.1	Barley	peroxisome, plastid	0.64	0.88

Protein Annotations

Gene3D:3.20.20.70	MapMan:50.1.1	UniProt:A0A287I4J9	InterPro:Aldolase_TIM	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G060070	EnsemblPlants:HORVU2Hr1G060070.1	InterPro:IPR013785	InterPro:IPR037396	PFAM:PF01070
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI000B47722B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:399643093..399645678

Molecular Weight (calculated)

16783.4 Da

IEP (calculated)

12.155

GRAVY (calculated)

-0.224

Length

157 amino acids

Sequence
(BLAST)

001: MDVKWLQSIT TMPILVKGVI TAEDSRLAVE NGAAGIIVSN HGARQLDYVP ATISALEEVV KAARGQIPVF LDGGVRRGTD VFKALALGAA GVFVNRKAGG
101: VLAGGGRGGR GEQRAQDAAR RVRADHGAQR LQLASRHHPQ PRRHRGRQIR RHAVPLV

Best Arabidopsis Sequence Match ( AT3G14420.4 )
(BLAST)

001: MVYDYYASGA EDQWTLQENR NAFARILFRP RILIDVSKID MTTTVLGFKI SMPIMVAPTA MQKMAHPDGE YATARAASAA GTIMTLSSWA TSSVEEVAST
101: GPGIRFFQLY VYKNRNVVEQ LVRRAERAGF KAIALTVDTP RLGRRESDIK NRFTLPPNLT LKNFEGLDLG KMDEANDSGL ASYVAGQIDR TLSWKDVQWL
201: QTITKLPILV KGVLTGEDAR IAIQAGAAGI IVSNHGARQL DYVPATISAL EEVVKATQGR IPVFLDGGVR RGTDVFKALA LGASGIFIGR PVVFSLAAEG
301: EAGVRKVLQM LRDEFELTMA LSGCRSLKEI SRNHITTEWD TPRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.