Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
Predictors | GFP | MS/MS | Papers | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU7Hr1G049220.10 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G14420.1 | HORVU7Hr1G049220.10 | AT5G56290.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU2Hr1G060070.1 | Barley | peroxisome | 41.82 | 99.36 |
AT3G14420.1 | Thale cress | peroxisome | 77.75 | 79.02 |
Solyc07g056540.2.1 | Tomato | plastid | 78.28 | 78.71 |
GSMUA_Achr7P07880_001 | Banana | peroxisome, plasma membrane, unclear | 77.21 | 78.47 |
PGSC0003DMT400071115 | Potato | cytosol | 77.48 | 77.9 |
KRH43857 | Soybean | peroxisome | 76.68 | 77.09 |
AT3G14415.2 | Thale cress | peroxisome | 76.68 | 76.68 |
VIT_19s0093g00510.t01 | Wine grape | peroxisome | 76.14 | 76.55 |
HORVU0Hr1G013900.4 | Barley | peroxisome | 67.02 | 76.45 |
VIT_10s0003g03830.t01 | Wine grape | peroxisome | 75.87 | 76.08 |
KRH13608 | Soybean | nucleus | 75.6 | 76.01 |
CDY70372 | Canola | cytosol, mitochondrion, plastid | 21.72 | 69.23 |
CDX88442 | Canola | cytosol, mitochondrion, plastid | 21.72 | 69.23 |
GSMUA_Achr4P22900_001 | Banana | peroxisome | 23.06 | 55.84 |
CDY52449 | Canola | mitochondrion | 32.44 | 55.5 |
Bra035032.1-P | Field mustard | mitochondrion | 32.44 | 55.5 |
CDX86782 | Canola | cytosol, peroxisome, plastid | 32.98 | 55.16 |
HORVU2Hr1G030930.2 | Barley | peroxisome | 53.62 | 54.64 |
HORVU6Hr1G051600.1 | Barley | peroxisome, plastid | 15.28 | 50.0 |
Protein Annotations
MapMan:1.3.2 | Gene3D:3.20.20.70 | UniProt:A0A287I4N2 | InterPro:Aldolase_TIM | InterPro:Alpha-hydoxy_acid_DH_FMN | InterPro:FMN-dep_DH |
InterPro:FMN_HAD | InterPro:FMN_hydac_DH_AS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0010181 | GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:HORVU2Hr1G060010 |
EnsemblPlants:HORVU2Hr1G060010.5 | InterPro:IPR013785 | InterPro:IPR037396 | PFAM:PF01070 | PIRSF:PIRSF000138 | ScanProsite:PS00557 |
PFscan:PS51349 | PANTHER:PTHR10578 | PANTHER:PTHR10578:SF80 | SUPFAM:SSF51395 | UniParc:UPI000B4893B5 | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:+:399551357..399565548
Molecular Weight (calculated)
41101.8 Da
IEP (calculated)
10.818
GRAVY (calculated)
-0.265
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: RRKMEITNVT EYQAIAKQKL PKMIYDYYAS GAEDEWTLQE NREAFARILF RPRILIDVSK IDMTTTILGF KLSMPIMISP TAMQKMAHPD GEYATARAAS
101: AAGTIMTLSS WATSSVEEVA STGPGIRFFQ LYVYKDRRVV EQLVRRAEKA GFKAIALTVD TPRLGRREAD IKNRFVLPQN LTLKNFEGLD LGKMDQANDS
201: GLASYVAGQI DRTLSWKDVK WLQSITTMPI LVKGVITAED SRLAVENGAA GIIVSNHGAR QLDYVPATIS ALEEVVKAAR GQIPVFLDGG VRRGTDVFKA
301: LALGAAGVFV NRKAGGVLAG GGRGGRGEQR AQDAARRVRA DHGAQRLQLA SRHHPQPRRH RGRQIRRHAV PLV
101: AAGTIMTLSS WATSSVEEVA STGPGIRFFQ LYVYKDRRVV EQLVRRAEKA GFKAIALTVD TPRLGRREAD IKNRFVLPQN LTLKNFEGLD LGKMDQANDS
201: GLASYVAGQI DRTLSWKDVK WLQSITTMPI LVKGVITAED SRLAVENGAA GIIVSNHGAR QLDYVPATIS ALEEVVKAAR GQIPVFLDGG VRRGTDVFKA
301: LALGAAGVFV NRKAGGVLAG GGRGGRGEQR AQDAARRVRA DHGAQRLQLA SRHHPQPRRH RGRQIRRHAV PLV
001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL
Arabidopsis Description
GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.