Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G024500.1 | Wheat | golgi, nucleus | 92.63 | 100.0 |
| TraesCS1D01G020000.1 | Wheat | cytosol | 92.63 | 100.0 |
| Os05t0106600-01 | Rice | nucleus | 92.14 | 99.47 |
| TraesCS1A01G020500.2 | Wheat | cytosol | 98.53 | 98.53 |
| KXG21029 | Sorghum | cytosol | 91.15 | 98.41 |
| Zm00001d011086_P005 | Maize | cytosol | 91.15 | 98.41 |
| Zm00001d035720_P002 | Maize | cytosol | 91.15 | 98.41 |
| HORVU5Hr1G117900.1 | Barley | cytosol | 90.66 | 97.88 |
| KRH43389 | Soybean | cytosol | 90.17 | 97.35 |
| KRH64098 | Soybean | cytosol | 90.17 | 97.35 |
| KRH59535 | Soybean | cytosol | 90.17 | 97.35 |
| AT5G09810.1 | Thale cress | cytosol | 90.17 | 97.35 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 79.36 | 97.29 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 89.93 | 97.08 |
| CDX69885 | Canola | cytosol | 89.93 | 97.08 |
| CDY21607 | Canola | cytosol | 89.93 | 97.08 |
| HORVU1Hr1G047440.2 | Barley | cytosol | 89.93 | 97.08 |
| CDY30296 | Canola | cytosol | 84.03 | 96.88 |
| CDY31972 | Canola | cytosol | 84.03 | 96.88 |
| CDY40061 | Canola | cytosol | 84.03 | 96.88 |
| CDX85794 | Canola | cytosol | 84.03 | 96.88 |
| PGSC0003DMT400047481 | Potato | cytosol | 89.68 | 96.82 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 89.68 | 96.82 |
| Bra028615.1-P | Field mustard | cytosol | 89.68 | 96.82 |
| Bra009081.1-P | Field mustard | cytosol | 83.78 | 96.6 |
| CDY56544 | Canola | cytosol | 89.43 | 96.55 |
| CDX81140 | Canola | cytosol | 89.43 | 96.55 |
| Zm00001d035722_P007 | Maize | plasma membrane | 91.15 | 96.36 |
| Solyc11g005330.1.1 | Tomato | nucleus | 89.19 | 96.29 |
| Bra006033.1-P | Field mustard | cytosol | 89.19 | 96.29 |
| PGSC0003DMT400010174 | Potato | cytosol | 89.19 | 96.29 |
| Solyc01g104770.2.1 | Tomato | nucleus | 88.94 | 96.02 |
| PGSC0003DMT400076499 | Potato | cytosol | 45.45 | 95.85 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 87.47 | 94.43 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 87.47 | 94.43 |
| HORVU1Hr1G074350.1 | Barley | cytosol | 85.75 | 92.82 |
| Solyc04g071260.2.1 | Tomato | plastid | 85.5 | 92.31 |
| CDX99315 | Canola | cytosol | 72.48 | 91.33 |
| AT1G49240.1 | Thale cress | cytosol | 84.52 | 91.25 |
| Bra022356.1-P | Field mustard | cytosol | 72.24 | 91.02 |
| AT3G18780.3 | Thale cress | cytosol | 84.28 | 90.98 |
| CDX82326 | Canola | cytosol | 84.28 | 90.98 |
| CDX92272 | Canola | cytosol | 84.28 | 90.98 |
| CDX95498 | Canola | cytosol | 84.28 | 90.98 |
| CDY18545 | Canola | cytosol | 84.28 | 90.98 |
| CDY61982 | Canola | cytosol | 84.28 | 90.98 |
| CDX92271 | Canola | cytosol | 70.27 | 90.22 |
| HORVU4Hr1G008310.9 | Barley | cytosol | 89.93 | 89.93 |
| HORVU5Hr1G000180.1 | Barley | cytosol, nucleus | 88.45 | 88.02 |
| PGSC0003DMT400076501 | Potato | cytosol | 43.0 | 87.5 |
| KXG21030 | Sorghum | cytosol | 82.31 | 86.12 |
| HORVU3Hr1G083380.1 | Barley | cytosol | 81.57 | 85.13 |
| GSMUA_Achr2P08030_001 | Banana | cytosol | 72.24 | 84.0 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 71.99 | 83.0 |
| Zm00001d011087_P001 | Maize | plastid | 91.15 | 81.72 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 89.43 | 79.13 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 52.09 | 77.37 |
| HORVU5Hr1G039850.3 | Barley | mitochondrion | 86.49 | 75.7 |
| PGSC0003DMT400022210 | Potato | cytosol | 63.88 | 70.65 |
| PGSC0003DMT400022205 | Potato | cytosol | 62.65 | 69.67 |
| PGSC0003DMT400074882 | Potato | cytosol | 62.65 | 68.92 |
| PGSC0003DMT400074887 | Potato | cytosol | 59.95 | 65.95 |
| PGSC0003DMT400088088 | Potato | cytosol | 30.47 | 63.92 |
| HORVU4Hr1G007240.3 | Barley | cytosol | 40.79 | 35.39 |
| HORVU6Hr1G032610.8 | Barley | cytosol | 38.57 | 32.64 |
| HORVU7Hr1G074460.5 | Barley | cytosol | 34.4 | 32.11 |
| HORVU6Hr1G053910.4 | Barley | cytosol | 34.4 | 31.67 |
| HORVU5Hr1G088030.1 | Barley | plastid | 39.07 | 31.3 |
| HORVU5Hr1G102220.2 | Barley | plastid | 31.45 | 29.22 |
| HORVU0Hr1G005770.1 | Barley | cytosol | 30.47 | 28.84 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G002840.6 | EnsemblPlantsGene:HORVU1Hr1G002840 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Actin | InterPro:Actin/actin-like_CS | InterPro:Actin_CS | PANTHER:PTHR11937 |
| PANTHER:PTHR11937:SF252 | PFAM:PF00022 | PRINTS:PR00190 | ScanProsite:PS00406 | ScanProsite:PS00432 | ScanProsite:PS01132 |
| SMART:SM00268 | SUPFAM:SSF53067 | UniParc:UPI000B480F22 | UniProt:A0A287EGU1 | MapMan:20.2.1 | : |
Description
No Description!
Coordinates
chrchr1H:-:5769472..5771081
Molecular Weight (calculated)
45225.2 Da
IEP (calculated)
5.073
GRAVY (calculated)
-0.174
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKNSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MESSGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVRLL FSLTFYNSSD PKPTSETCSI WLCLYQMWIS KDEYDESGPA
401: IVHRKCF
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKNSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MESSGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVRLL FSLTFYNSSD PKPTSETCSI WLCLYQMWIS KDEYDESGPA
401: IVHRKCF
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.