Factsheet for HORVU5Hr1G000180.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G270700.1	Wheat	cytosol	45.48	100.0
TraesCS5D01G000400.1	Wheat	cytosol	92.18	100.0
TraesCS5A01G000400.1	Wheat	golgi	92.18	100.0
GSMUA_Achr4P31250_001	Banana	cytosol	89.49	97.08
GSMUA_Achr2P15150_001	Banana	cytosol	82.4	96.56
GSMUA_Achr3P20240_001	Banana	cytosol	70.66	96.33
HORVU5Hr1G117900.1	Barley	cytosol	88.75	96.29
GSMUA_Achr6P02480_001	Banana	cytosol	69.68	95.96
GSMUA_Achr10P...	Banana	cytosol	77.02	95.74
HORVU1Hr1G047440.2	Barley	cytosol	87.53	94.96
HORVU4Hr1G008310.9	Barley	cytosol	91.2	91.65
HORVU1Hr1G074350.1	Barley	cytosol	83.86	91.22
HORVU1Hr1G002840.6	Barley	plasma membrane	88.02	88.45
HORVU3Hr1G083380.1	Barley	cytosol	80.44	84.36
HORVU5Hr1G039850.3	Barley	mitochondrion	85.09	74.84
HORVU4Hr1G007240.3	Barley	cytosol	39.85	34.75
HORVU6Hr1G032610.8	Barley	cytosol	37.65	32.02
HORVU6Hr1G053910.4	Barley	cytosol	34.47	31.9
HORVU7Hr1G074460.5	Barley	cytosol	33.74	31.65
HORVU5Hr1G088030.1	Barley	plastid	38.14	30.71
HORVU5Hr1G102220.2	Barley	plastid	31.54	29.45
HORVU0Hr1G005770.1	Barley	cytosol	29.1	27.67

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	UniProt:A0A287Q5A4	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU5Hr1G000180
EnsemblPlants:HORVU5Hr1G000180.1	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132
PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000B4879A8	SEG:seg

Description

No Description!

Coordinates

chrchr5H:+:605254..606940

Molecular Weight (calculated)

45993.4 Da

IEP (calculated)

9.405

GRAVY (calculated)

-0.428

Length

409 amino acids

Sequence
(BLAST)

001: RNKTNNVQER RRRRRRRRSR AVRRKKKGRK KKMADGEDIQ PLVCDNGTGM VKAGFAGDDA PRAVFPSIVG RPRHTGVMVG MGQKDAYVGD EAQSKRGILT
101: LKYPIEHGIV SNWDDMEKIW HHTFYNELRV APEEHPVLLT EAPLNPKANR EKMTQIMFET FNTPAMYVAI QAVLSLYASG RTTGIVLDSG DGVSHTVPIY
201: EGYALPHAIL RLDLAGRDLT DHLMKILTER GYSFTTTAER EIVRDMKEKL SYIALDYDQE METSKTSSSV EKSYELPDGQ VITIGAERFR CPEVLFQPSF
301: IGMEAAGIHE TTYNSIMKCD VDIRKDLYGN IVLSGGTTMF TGIADRMSKE ITALAPSSMK IKVVAPPERK YSVWIGGSIL ASLSTFQQMW IAKAEYDESG
401: PSIVHRKCF

Best Arabidopsis Sequence Match ( AT3G46520.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT12Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.