Factsheet for HORVU5Hr1G039850.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G002840.6
HORVU1Hr1G048450.4
HORVU1Hr1G074350.1
HORVU1Hr1G080290.6
HORVU1Hr1G094840.9
HORVU3Hr1G004510.1
HORVU3Hr1G021490.1
HORVU3Hr1G050340.1
HORVU3Hr1G067360.1
HORVU3Hr1G067380.4
HORVU5Hr1G039850.3
HORVU5Hr1G100770.1
HORVU5Hr1G117900.1
HORVU7Hr1G029040.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	HORVU1Hr1G080290.6	AT1G72770.1	19033529
AT1G49240.1	HORVU1Hr1G094840.9	AT1G72770.1	19033529
AT1G49240.1	HORVU3Hr1G050340.1	AT1G72770.1	19033529
AT1G49240.1	HORVU3Hr1G067360.1	AT1G72770.1	19033529
AT1G49240.1	HORVU3Hr1G067380.4	AT1G72770.1	19033529
AT1G49240.1	HORVU7Hr1G029040.1	AT1G72770.1	19033529
AT5G09810.1	HORVU1Hr1G048450.4	AT2G31200.1	21798944
AT5G09810.1	HORVU5Hr1G100770.1	AT2G31200.1	21798944
AT5G09810.1	HORVU3Hr1G004510.1	AT3G18060.1	21798944
AT5G09810.1	HORVU3Hr1G021490.1	AT3G18060.1	21798944
AT5G09810.1	HORVU1Hr1G002840.6	AT5G09810.1	21798944
AT5G09810.1	HORVU1Hr1G074350.1	AT5G09810.1	21798944
AT5G09810.1	HORVU5Hr1G039850.3	AT5G09810.1	21798944
AT5G09810.1	HORVU5Hr1G117900.1	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	69.68	97.59
TraesCS5B01G124100.1	Wheat	cytosol	77.63	95.76
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	76.99	94.96
Zm00001d053177_P004	Maize	cytosol	76.56	94.43
VIT_12s0178g00200.t01	Wine grape	cytosol	76.56	94.43
KXG23031	Sorghum	cytosol	76.34	94.16
HORVU5Hr1G117900.1	Barley	cytosol	76.13	93.9
KRH59535	Soybean	cytosol	76.13	93.9
KRH43389	Soybean	cytosol	76.13	93.9
CDX81140	Canola	cytosol	75.91	93.63
CDX69885	Canola	cytosol	75.91	93.63
KRH64098	Soybean	cytosol	75.91	93.63
HORVU1Hr1G047440.2	Barley	cytosol	75.91	93.63
CDY56544	Canola	cytosol	75.91	93.63
CDY21607	Canola	cytosol	75.91	93.63
AT5G09810.1	Thale cress	cytosol	75.91	93.63
Solyc03g078400.2.1	Tomato	nucleus, plastid	75.7	93.37
Bra006033.1-P	Field mustard	cytosol	75.7	93.37
Bra028615.1-P	Field mustard	cytosol	75.7	93.37
PGSC0003DMT400047481	Potato	cytosol	75.7	93.37
CDY30296	Canola	cytosol	70.75	93.2
CDY31972	Canola	cytosol	70.75	93.2
CDY40061	Canola	cytosol	70.75	93.2
CDX85794	Canola	cytosol	70.75	93.2
PGSC0003DMT400010174	Potato	cytosol	75.48	93.1
Solyc11g005330.1.1	Tomato	nucleus	75.48	93.1
Bra009081.1-P	Field mustard	cytosol	70.54	92.92
Solyc01g104770.2.1	Tomato	nucleus	75.05	92.57
TraesCS5D01G132200.1	Wheat	golgi	73.12	91.64
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	73.76	90.98
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	73.76	90.98
HORVU1Hr1G074350.1	Barley	cytosol	72.9	90.16
HORVU3Hr1G083380.1	Barley	cytosol	74.62	88.97
CDX82326	Canola	cytosol	71.83	88.59
AT3G18780.3	Thale cress	cytosol	71.61	88.33
CDY18545	Canola	cytosol	71.61	88.33
CDY61982	Canola	cytosol	71.61	88.33
CDX95498	Canola	cytosol	71.61	88.33
CDX92272	Canola	cytosol	71.61	88.33
AT1G49240.1	Thale cress	cytosol	71.61	88.33
TraesCS5A01G124300.2	Wheat	golgi	77.63	88.26
PGSC0003DMT400076499	Potato	cytosol	36.56	88.08
Solyc04g071260.2.1	Tomato	plastid	71.4	88.06
PGSC0003DMT400076501	Potato	cytosol	37.85	88.0
Bra022356.1-P	Field mustard	cytosol	61.08	87.93
CDX99315	Canola	cytosol	61.08	87.93
CDX92271	Canola	cytosol	59.35	87.07
HORVU1Hr1G002840.6	Barley	plasma membrane	75.7	86.49
HORVU5Hr1G000180.1	Barley	cytosol, nucleus	74.84	85.09
HORVU4Hr1G008310.9	Barley	cytosol	74.19	84.77
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	60.86	80.17
PGSC0003DMT400087294	Potato	mitochondrion	45.59	77.37
VIT_04s0044g00580.t01	Wine grape	extracellular	76.34	77.17
PGSC0003DMT400022210	Potato	cytosol	53.98	68.21
PGSC0003DMT400022205	Potato	cytosol	52.04	66.12
PGSC0003DMT400074882	Potato	cytosol	52.47	65.95
PGSC0003DMT400074887	Potato	cytosol	50.11	62.97
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	75.48	59.49
PGSC0003DMT400088088	Potato	cytosol	24.52	58.76
HORVU4Hr1G007240.3	Barley	cytosol	34.62	34.33
HORVU6Hr1G032610.8	Barley	cytosol	33.33	32.22
HORVU6Hr1G053910.4	Barley	cytosol	29.89	31.45
HORVU7Hr1G074460.5	Barley	cytosol	29.03	30.96
HORVU5Hr1G088030.1	Barley	plastid	33.55	30.71
HORVU5Hr1G102220.2	Barley	plastid	27.53	29.22
HORVU0Hr1G005770.1	Barley	cytosol	26.02	28.14

Protein Annotations

EnsemblPlants:HORVU5Hr1G039850.3	EnsemblPlantsGene:HORVU5Hr1G039850	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	SEG:seg	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002963566
UniProt:M0UQJ6	MapMan:20.2.1	:	:	:	:

Description

Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0UQJ6]

Coordinates

chrchr5H:+:290717098..290719292

Molecular Weight (calculated)

51602.2 Da

IEP (calculated)

7.629

GRAVY (calculated)

-0.175

Length

465 amino acids

Sequence
(BLAST)

001: MCAYKRGHEA KPNTWFSCLC LVRRHRRHPP SHPLRPLFAV SAHLGGRSSG GQVPLDPRSH LIKWLTVRTS SPLSATMELA WSRFVLLLLV NSPQSSLHGA
101: DCGLYSPQAG FAGDDAPRAV FPSIVGRPRH TGVMVGMGQK DAYVGDEAQS KRGILTLKYP IEHGIVSNWD DMEKIWHHTF YNELRVAPEE HPVLLTEAPL
201: NPKANREKMT QIMFETFNVP AMYVAIQAVL SLYASGRTTG IVLDSGDGVS HTVPIYEGYA LPHAILRLDL AGRDLTDCLM KILTERGYSF TTTAEREIVR
301: DIKEKLAYVA LDYEQELENA KSSSSVEKSY ELPDGQVITI GAERFRCPEV LFQPSFIGME AAGIHETTYN SIMKCDVDIR KDLYGNIVLS GGSTMFPGIA
401: DRMSKEITAL APSSMKIKVV APPERKYSVW IGGSILASLS TFQQMWISKG EYDESGPAIV HRKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.