CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 25806999
endoplasmic reticulum: 27224218

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	99.73	99.73
VIT_12s0178g00200.t01	Wine grape	cytosol	96.02	96.02
PGSC0003DMT400076499	Potato	cytosol	48.81	95.34
KRH43389	Soybean	cytosol	95.23	95.23
KRH59535	Soybean	cytosol	95.23	95.23
TraesCS5B01G124100.1	Wheat	cytosol	94.96	94.96
KRH64098	Soybean	cytosol	94.96	94.96
GSMUA_Achr2P16160_001	Banana	cytosol	94.96	94.96
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	94.96	94.96
GSMUA_Achr9P03170_001	Banana	cytosol	94.69	94.95
Zm00001d019635_P001	Maize	cytosol	34.75	94.93
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	83.55	94.88
TraesCS5B01G516100.1	Wheat	cytosol	94.69	94.69
TraesCS5D01G516200.1	Wheat	cytosol	94.69	94.69
HORVU5Hr1G117900.1	Barley	cytosol	94.69	94.69
Os05t0106600-01	Rice	nucleus	94.69	94.69
GSMUA_Achr10P...	Banana	cytosol	94.69	94.69
GSMUA_Achr5P29190_001	Banana	cytosol	87.27	94.54
GSMUA_Achr7P10410_001	Banana	cytosol	94.43	94.43
Solyc01g104770.2.1	Tomato	nucleus	94.43	94.43
Zm00001d035720_P002	Maize	cytosol	94.43	94.43
KXG21029	Sorghum	cytosol	94.43	94.43
TraesCS1B01G024500.1	Wheat	golgi, nucleus	94.43	94.43
TraesCS1D01G020000.1	Wheat	cytosol	94.43	94.43
Zm00001d011086_P005	Maize	cytosol	94.43	94.43
KXG23031	Sorghum	cytosol	94.43	94.43
EES08028	Sorghum	cytosol	94.43	94.43
TraesCS4A01G356100.2	Wheat	cytosol	94.69	94.2
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.16	94.16
Os01t0964133-01	Rice	plasma membrane	94.16	94.16
EER90564	Sorghum	cytosol	94.16	94.16
Zm00001d053177_P004	Maize	cytosol	94.16	94.16
GSMUA_Achr6P25350_001	Banana	cytosol	94.16	94.16
GSMUA_Achr8P02660_001	Banana	cytosol	94.16	94.16
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.9	93.9
KRH01660	Soybean	mitochondrion, nucleus	93.9	93.9
KRG95386	Soybean	cytosol	93.9	93.9
GSMUA_Achr3P02960_001	Banana	cytosol	93.9	93.9
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.9	93.9
GSMUA_Achr8P16150_001	Banana	cytosol	93.9	93.9
GSMUA_Achr9P08850_001	Banana	cytosol	86.74	93.7
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	93.63	93.63
KRH71847	Soybean	endoplasmic reticulum, nucleus	93.63	93.63
Os03t0836000-01	Rice	plasma membrane, plastid	93.63	93.63
KRH38098	Soybean	cytosol	93.63	93.63
KRH70465	Soybean	mitochondrion, nucleus	93.63	93.63
KRH10268	Soybean	mitochondrion, nucleus	93.63	93.63
GSMUA_Achr6P34320_001	Banana	cytosol	60.48	93.44
KRG93168	Soybean	mitochondrion, nucleus	93.37	93.37
GSMUA_Achr11P...	Banana	cytosol	86.21	93.12
GSMUA_Achr11P...	Banana	cytosol	92.84	92.84
Zm00001d035722_P007	Maize	plasma membrane	94.43	92.47
Os05t0438800-01	Rice	plasma membrane, plastid	91.25	91.49
Zm00001d012277_P001	Maize	cytosol	90.98	91.22
Zm00001d016605_P001	Maize	cytosol	38.2	91.14
EES01810	Sorghum	cytosol	90.72	90.96
TraesCS5D01G132200.1	Wheat	golgi	89.39	90.84
EES19603	Sorghum	cytosol	90.19	90.43
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	90.19	90.43
TraesCS1D01G274400.1	Wheat	cytosol	90.19	90.43
HORVU1Hr1G074350.1	Barley	cytosol	90.19	90.43
TraesCS1A01G274400.1	Wheat	golgi	90.19	90.43
TraesCS1B01G283900.1	Wheat	cytosol	90.19	90.43
Zm00001d010159_P002	Maize	extracellular, plasma membrane	89.92	90.16
Zm00001d034761_P002	Maize	cytosol	93.63	90.05
TraesCS5A01G124300.2	Wheat	golgi	94.96	87.53
TraesCS1A01G020500.2	Wheat	cytosol	94.43	87.47
HORVU1Hr1G002840.6	Barley	plasma membrane	94.43	87.47
PGSC0003DMT400076501	Potato	cytosol	45.36	85.5
GSMUA_Achr10P...	Banana	cytosol	62.33	85.45
Zm00001d016508_P001	Maize	cytosol	31.03	84.78
KRH24799	Soybean	cytosol	90.72	83.41
KXG21030	Sorghum	cytosol	84.62	82.01
Zm00001d008746_P001	Maize	cytosol	59.15	81.09
Zm00001d019396_P001	Maize	cytosol	36.07	80.95
GSMUA_Achr2P08030_001	Banana	cytosol	75.07	80.86
Zm00001d011087_P001	Maize	plastid	94.43	78.41
Zm00001d007792_P001	Maize	cytosol	53.58	76.52
Zm00001d003298_P001	Maize	cytosol	52.79	75.67
HORVU5Hr1G039850.3	Barley	mitochondrion	90.98	73.76
Zm00001d004087_P001	Maize	cytosol	41.38	72.22
Os01t0866100-01	Rice	plasma membrane	37.4	69.46
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	93.37	59.66
KRG94584	Soybean	cytosol	44.3	42.93
KRH06905	Soybean	cytosol	43.77	42.42
KRH39934	Soybean	cytosol	33.42	38.18
KRH13968	Soybean	cytosol, nucleus	36.34	37.95
KRH32953	Soybean	cytosol	36.07	37.67
KRH23861	Soybean	cytosol, nucleus	36.07	37.67
Zm00001d034421_P004	Maize	plastid	44.83	36.11
KRH59222	Soybean	cytosol	18.04	35.42
KRH66446	Soybean	nucleus	41.64	35.28
KRH41617	Soybean	nucleus	39.79	34.8
KRH48882	Soybean	nucleus	40.85	34.53
KRH59228	Soybean	nucleus	37.93	33.41
KRH61849	Soybean	cytosol, nucleus	33.95	29.36

Protein Annotations

EntrezGene:100778206	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02009144	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	EnsemblPlantsGene:GLYMA_15G050200	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	UniProt:I1MDT4	EnsemblPlants:KRH10484	ProteinID:KRH10484	ProteinID:KRH10484.1	PFAM:PF00022
PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF361
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0001BA5C0B	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:3963341..3966353

Molecular Weight (calculated)

41655.0 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.154

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VVDNGTGMVK AGFAGDDAPR AVFPSIIGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTEY LVKILTERGY
201: SFSTSAEKEI VRDVKEKLAY VALDFEQEME TTKSSSAVEK SYELPDGQVI TIGSERFRCP EVLFQPSLIG MEATGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIS ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KGEYDESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.