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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • cytosol 4
  • nucleus 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG93168
KRG95386
KRH01660
KRH04597
KRH10268
KRH23061
KRH24799
KRH28456
KRH29804
KRH38098
KRH56507
KRH57934
KRH63322
KRH67068
KRH70465
KRH71847
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37620.1 KRH04597 AT2G23420.1 21798944
AT2G37620.1 KRH28456 AT2G23420.1 21798944
AT2G37620.1 KRH57934 AT2G23420.1 21798944
AT2G37620.1 KRH63322 AT2G23420.1 21798944
AT2G37620.1 KRH77015 AT2G23420.1 21798944
AT2G37620.1 KRG93168 AT2G37620.1 21798944
AT2G37620.1 KRG95386 AT2G37620.1 21798944
AT2G37620.1 KRH01660 AT2G37620.1 21798944
AT2G37620.1 KRH10268 AT2G37620.1 21798944
AT2G37620.1 KRH23061 AT2G37620.1 21798944
AT2G37620.1 KRH24799 AT2G37620.1 21798944
AT2G37620.1 KRH29804 AT2G37620.1 21798944
AT2G37620.1 KRH38098 AT2G37620.1 21798944
AT2G37620.1 KRH56507 AT2G37620.1 21798944
AT2G37620.1 KRH67068 AT2G37620.1 21798944
AT2G37620.1 KRH70465 AT2G37620.1 21798944
AT2G37620.1 KRH71847 AT2G37620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH38098 Soybean cytosol 99.73 99.73
KRG95386 Soybean cytosol 98.41 98.41
KRH67068 Soybean endoplasmic reticulum, mitochondrion, nucleus 98.41 98.41
KRH29804 Soybean endoplasmic reticulum, mitochondrion, nucleus 98.14 98.14
KRH23061 Soybean endoplasmic reticulum, mitochondrion, nucleus 97.88 97.88
KRH10268 Soybean mitochondrion, nucleus 97.88 97.88
Solyc10g080500.1.1 Tomato extracellular, nucleus, plastid, unclear 97.61 97.61
PGSC0003DMT400060953 Potato cytosol 97.61 97.61
VIT_08s0007g06520.t01 Wine grape cytosol 97.35 97.35
GSMUA_AchrUn_... Banana plasma membrane 97.35 97.35
AT3G46520.2 Thale cress cytosol 97.08 97.08
GSMUA_Achr10P... Banana cytosol 67.64 96.96
CDY38066 Canola cytosol 96.82 96.82
AT2G37620.1 Thale cress cytosol 96.82 96.82
CDY21777 Canola cytosol 96.82 96.82
CDX99111 Canola cytosol 96.82 96.82
CDX88698 Canola cytosol 96.82 96.82
CDX86081 Canola cytosol 96.82 96.82
CDX78202 Canola cytosol 96.82 96.82
Bra007025.1-P Field mustard cytosol 96.82 96.82
AT3G12110.1 Thale cress cytosol 96.82 96.82
AT3G53750.2 Thale cress cytosol 96.82 96.82
AT5G59370.2 Thale cress cytosol 96.82 96.82
CDX71119 Canola cytosol 96.82 96.82
Bra018210.1-P Field mustard cytosol 96.82 96.82
Bra019486.1-P Field mustard cytosol 96.82 96.82
CDX73527 Canola cytosol 90.45 96.6
Bra034778.1-P Field mustard cytosol 96.55 96.55
CDX76191 Canola cytosol 96.55 96.55
KRH70465 Soybean mitochondrion, nucleus 96.55 96.55
Bra000010.1-P Field mustard cytosol 96.55 96.55
KRH01660 Soybean mitochondrion, nucleus 96.55 96.55
Bra014865.1-P Field mustard cytosol 96.55 96.55
CDY01102 Canola cytosol 96.55 96.55
CDX82985 Canola cytosol 96.55 96.55
Bra033819.1-P Field mustard cytosol 96.55 96.55
Bra006719.1-P Field mustard cytosol 84.88 96.39
CDY08455 Canola cytosol 96.29 96.29
CDX74944 Canola cytosol 96.29 96.29
CDX91373 Canola cytosol 96.29 96.29
CDY53444 Canola cytosol 96.29 96.29
Bra017166.1-P Field mustard cytosol 96.29 96.29
CDX93360 Canola cytosol 84.35 96.07
CDY65255 Canola cytosol 84.35 96.07
CDY07779 Canola cytosol 89.66 96.02
KRH56507 Soybean endoplasmic reticulum, mitochondrion 96.02 96.02
KRH43389 Soybean cytosol 96.02 96.02
KRH59535 Soybean cytosol 96.02 96.02
CDY30846 Canola cytosol 96.02 96.02
Bra020319.1-P Field mustard cytosol 86.47 95.88
CDY48688 Canola cytosol 86.47 95.88
KRG93168 Soybean mitochondrion, nucleus 95.76 95.76
KRH64098 Soybean cytosol 95.76 95.76
KRH53856 Soybean endoplasmic reticulum, mitochondrion 84.08 95.48
Bra005178.1-P Field mustard cytosol 89.66 95.48
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 93.63 93.63
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 93.63 93.63
GSMUA_Achr7P18630_001 Banana cytosol 78.78 92.81
CDX94448 Canola cytosol 93.63 91.21
CDX79746 Canola cytosol 89.66 90.86
Bra003156.1-P Field mustard cytosol 48.81 89.32
KRH24799 Soybean cytosol 93.9 86.34
CDY71336 Canola cytosol 55.17 75.64
CDX67573 Canola cytosol 55.7 69.08
Bra002571.1-P Field mustard nucleus 96.55 60.17
CDY33033 Canola nucleus 78.78 54.9
CDX80274 Canola nucleus 77.45 53.19
KRG94584 Soybean cytosol 44.56 43.19
KRH06905 Soybean cytosol 43.77 42.42
KRH39934 Soybean cytosol 33.16 37.88
KRH13968 Soybean cytosol, nucleus 36.07 37.67
KRH23861 Soybean cytosol, nucleus 35.81 37.4
KRH32953 Soybean cytosol 35.54 37.12
KRH66446 Soybean nucleus 43.24 36.63
KRH48882 Soybean nucleus 42.71 36.1
KRH41617 Soybean nucleus 40.85 35.73
KRH59222 Soybean cytosol 17.77 34.9
KRH59228 Soybean nucleus 38.2 33.64
KRH61849 Soybean cytosol, nucleus 33.42 28.9
Protein Annotations
EntrezGene:100813210MapMan:20.2.1Gene3D:3.30.420.40Gene3D:3.90.640.10EMBL:ACUP02001091InterPro:Actin
InterPro:Actin/actin-like_CSInterPro:Actin_CSEnsemblPlantsGene:GLYMA_02G172800GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524UniProt:I1JG11EnsemblPlants:KRH71847ProteinID:KRH71847ProteinID:KRH71847.1ProteinID:KRH71848.1
ProteinID:KRH71849.1PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132
PANTHER:PTHR11937PANTHER:PTHR11937:SF355SMART:SM00268SUPFAM:SSF53067UniParc:UPI000233713C:
Description
hypothetical protein
Coordinates
chr2:+:27461138..27464515
Molecular Weight (calculated)
41666.1 Da
IEP (calculated)
5.162
GRAVY (calculated)
-0.182
Length
377 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDVKEKLAY IALDYEQEVE TAKTSSAVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MESPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.