CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH59222
KRH59228

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	KRH59222	AT1G13180.1	17267444
AT3G27000.1	KRH59228	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94584	Soybean	cytosol	98.71	98.71
VIT_14s0068g01630.t01	Wine grape	cytosol	94.09	94.09
CDY00172	Canola	cytosol	93.06	93.06
Solyc02g094320.2.1	Tomato	cytosol	93.06	93.06
Bra039097.1-P	Field mustard	cytosol	92.8	92.8
CDY20066	Canola	cytosol	92.8	92.8
Bra025243.1-P	Field mustard	cytosol	87.15	92.62
AT3G27000.1	Thale cress	cytosol	92.55	92.55
GSMUA_AchrUn_...	Banana	cytosol	91.26	91.26
CDY13674	Canola	cytosol	92.29	90.89
CDY52404	Canola	cytosol	92.29	90.89
Zm00001d022558_P001	Maize	cytosol	90.23	90.23
EER99952	Sorghum	cytosol	89.97	89.97
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.66	87.66
PGSC0003DMT400052197	Potato	cytosol	88.43	86.22
TraesCS3A01G369400.1	Wheat	cytosol	87.15	84.75
TraesCS3B01G401300.2	Wheat	cytosol	86.89	81.25
HORVU4Hr1G007240.3	Barley	cytosol	86.38	71.64
KRG95386	Soybean	cytosol	42.42	43.77
KRH64098	Soybean	cytosol	42.42	43.77
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	42.42	43.77
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	42.42	43.77
KRH71847	Soybean	endoplasmic reticulum, nucleus	42.42	43.77
KRH38098	Soybean	cytosol	42.42	43.77
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	42.42	43.77
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	42.42	43.77
KRH10268	Soybean	mitochondrion, nucleus	42.42	43.77
KRH70465	Soybean	mitochondrion, nucleus	42.16	43.5
KRH01660	Soybean	mitochondrion, nucleus	42.16	43.5
KRH59535	Soybean	cytosol	42.16	43.5
KRH43389	Soybean	cytosol	42.16	43.5
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	42.16	43.5
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	41.65	42.97
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	36.5	42.77
KRG93168	Soybean	mitochondrion, nucleus	41.39	42.71
KRH24799	Soybean	cytosol	41.65	39.51
KRH59222	Soybean	cytosol	15.42	31.25
KRH59228	Soybean	nucleus	32.9	29.91
KRH39934	Soybean	cytosol	24.68	29.09
KRH23861	Soybean	cytosol, nucleus	26.99	29.09
KRH41617	Soybean	nucleus	31.36	28.31
KRH13968	Soybean	cytosol, nucleus	26.22	28.25
KRH66446	Soybean	nucleus	31.88	27.87
KRH32953	Soybean	cytosol	25.71	27.7
KRH48882	Soybean	nucleus	31.62	27.58
KRH61849	Soybean	cytosol, nucleus	27.76	24.77

Protein Annotations

EntrezGene:100796648	MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02009897	InterPro:Actin
InterPro:Arp2	EnsemblPlantsGene:GLYMA_16G053400	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034314	UniProt:I1MLF1	EnsemblPlants:KRH06905
ProteinID:KRH06905	ProteinID:KRH06905.1	PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF149
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000233EA7E	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:5187313..5196238

Molecular Weight (calculated)

44145.4 Da

IEP (calculated)

5.186

GRAVY (calculated)

-0.202

Length

389 amino acids

Sequence
(BLAST)

001: MDSKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPMLR YEESLTEQAL KDIVVGEGCA DLRHQLDISY PVNNGIVQNW DDMCHVWDHA FFNELKINPQ
101: DCKILLTDPP LNPSKNREQM VETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITSYL VDLLSRRGYA
201: LNRNADFETV REIKEKLCYI SYDYKREYQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEILD RYLDVVLKGN RDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYLEEGI ACLSRCGQA

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.