Factsheet for PGSC0003DMT400052197

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400027956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	PGSC0003DMT400027956	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g094320.2.1	Tomato	cytosol	91.73	94.09
VIT_14s0068g01630.t01	Wine grape	cytosol	87.47	89.72
KRH06905	Soybean	cytosol	86.22	88.43
KRG94584	Soybean	cytosol	86.22	88.43
GSMUA_AchrUn_...	Banana	cytosol	84.71	86.89
Bra039097.1-P	Field mustard	cytosol	84.21	86.38
AT3G27000.1	Thale cress	cytosol	84.21	86.38
CDY20066	Canola	cytosol	84.21	86.38
Bra025243.1-P	Field mustard	cytosol	79.2	86.34
CDY00172	Canola	cytosol	83.96	86.12
Zm00001d022558_P001	Maize	cytosol	83.71	85.86
EER99952	Sorghum	cytosol	83.46	85.6
CDY13674	Canola	cytosol	83.71	84.56
CDY52404	Canola	cytosol	83.71	84.56
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.7	82.78
TraesCS3A01G369400.1	Wheat	cytosol	80.7	80.5
TraesCS3B01G401300.2	Wheat	cytosol	80.45	77.16
HORVU4Hr1G007240.3	Barley	cytosol	81.95	69.72
PGSC0003DMT400076499	Potato	cytosol	23.56	48.7
PGSC0003DMT400023026	Potato	cytosol	41.85	44.3
PGSC0003DMT400071331	Potato	cytosol	41.6	44.03
PGSC0003DMT400010174	Potato	cytosol	41.35	43.77
PGSC0003DMT400047481	Potato	cytosol	41.35	43.77
PGSC0003DMT400001169	Potato	cytosol	41.35	43.65
PGSC0003DMT400060953	Potato	cytosol	41.1	43.5
PGSC0003DMT400049429	Potato	cytosol	41.1	43.5
PGSC0003DMT400077954	Potato	cytosol	40.85	43.24
PGSC0003DMT400060225	Potato	cytosol	40.85	43.24
PGSC0003DMT400022210	Potato	cytosol	35.59	38.59
PGSC0003DMT400087294	Potato	mitochondrion	26.32	38.32
PGSC0003DMT400022205	Potato	cytosol	34.84	37.98
PGSC0003DMT400074882	Potato	cytosol	34.84	37.57
PGSC0003DMT400074887	Potato	cytosol	33.58	36.22
PGSC0003DMT400088088	Potato	cytosol	17.29	35.57
PGSC0003DMT400076501	Potato	cytosol	17.29	34.5
PGSC0003DMT400027956	Potato	cytosol	34.84	32.25
PGSC0003DMT400056033	Potato	cytosol	30.58	28.05
PGSC0003DMT400019210	Potato	cytosol	24.06	26.67
PGSC0003DMT400038724	Potato	cytosol	27.07	24.66

Protein Annotations

EntrezGene:102583119	MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp2
GO:GO:0000166	GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150
GO:GO:0009653	GO:GO:0009825	GO:GO:0009987	GO:GO:0010090	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0034314	GO:GO:0040007	UniProt:M1BSY7
PFAM:PF00022	EnsemblPlantsGene:PGSC0003DMG400020244	PGSC:PGSC0003DMG400020244	EnsemblPlants:PGSC0003DMT400052197	PRINTS:PR00190	PANTHER:PTHR11937
PANTHER:PTHR11937:SF149	SMART:SM00268	SUPFAM:SSF53067	TMHMM:TMhelix	UniParc:UPI000294BAC5	:

Description

Actin [Source:PGSC_GENE;Acc:PGSC0003DMG400020244]

Coordinates

chr2:+:48106160..48112935

Molecular Weight (calculated)

45565.6 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.147

Length

399 amino acids

Sequence
(BLAST)

001: MDNRNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPMLR YEESLMEQDL KDIIVGDECL KLRHQLDLSY PVNNGIVQNW DDMGSVWDHA FFNELKIDPT
101: ECKILLTDPP LNPSKNREMM VETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITSYM VDLLLRRGYA
201: MNRSADFETV RDIKEKLCYI SYDYKREYQL GLETTILVKN YTLPDGRVLK VGTERFQAPE ALFTPDLIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEILD RYLDVVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKVWWYLFP LCSPISAPSQ IMHIKEYLFP GEIKRKPIS

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.