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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX98005
CDY19392
CDY21087
CDY34585

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G27000.1 CDX98005 AT1G13180.1 17267444
AT3G27000.1 CDY19392 AT1G13180.1 17267444
AT3G27000.1 CDY21087 AT1G13180.1 17267444
AT3G27000.1 CDY34585 AT1G13180.1 17267444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52404 Canola cytosol 99.75 99.75
Bra025243.1-P Field mustard cytosol 92.41 99.73
CDY20066 Canola cytosol 96.96 98.46
CDY00172 Canola cytosol 96.71 98.2
AT3G27000.1 Thale cress cytosol 96.2 97.69
KRH06905 Soybean cytosol 90.89 92.29
KRG94584 Soybean cytosol 90.89 92.29
VIT_14s0068g01630.t01 Wine grape cytosol 90.38 91.77
Solyc02g094320.2.1 Tomato cytosol 88.35 89.72
Zm00001d022558_P001 Maize cytosol 88.1 89.46
GSMUA_AchrUn_... Banana cytosol 87.85 89.2
EER99952 Sorghum cytosol 87.85 89.2
TraesCS3D01G362400.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 85.06 86.38
TraesCS3A01G369400.1 Wheat cytosol 84.81 83.75
PGSC0003DMT400052197 Potato cytosol 84.56 83.71
TraesCS3B01G401300.2 Wheat cytosol 84.56 80.29
HORVU4Hr1G007240.3 Barley cytosol 84.05 70.79
CDX92271 Canola cytosol 38.48 47.95
CDX73527 Canola cytosol 41.77 46.74
CDY30296 Canola cytosol 41.52 46.46
CDY31972 Canola cytosol 41.52 46.46
CDX85794 Canola cytosol 41.52 46.46
CDY40061 Canola cytosol 41.52 46.46
CDY65255 Canola cytosol 38.73 46.22
CDX93360 Canola cytosol 38.23 45.62
CDY30846 Canola cytosol 43.29 45.36
CDX76191 Canola cytosol 43.29 45.36
CDX78202 Canola cytosol 43.29 45.36
CDY21607 Canola cytosol 43.04 45.09
CDY56544 Canola cytosol 43.04 45.09
CDX69885 Canola cytosol 43.04 45.09
CDX81140 Canola cytosol 43.04 45.09
CDY01102 Canola cytosol 42.78 44.83
CDX91373 Canola cytosol 42.53 44.56
CDY08455 Canola cytosol 42.53 44.56
CDX82326 Canola cytosol 42.53 44.56
CDY18545 Canola cytosol 42.53 44.56
CDY61982 Canola cytosol 42.53 44.56
CDX92272 Canola cytosol 42.53 44.56
CDX74944 Canola cytosol 42.53 44.56
CDX95498 Canola cytosol 42.53 44.56
CDY07779 Canola cytosol 39.49 44.32
CDX99111 Canola cytosol 42.28 44.3
CDX71119 Canola cytosol 42.28 44.3
CDX82985 Canola cytosol 42.28 44.3
CDX88698 Canola cytosol 42.28 44.3
CDX86081 Canola cytosol 42.28 44.3
CDY53444 Canola cytosol 42.28 44.3
CDY21777 Canola cytosol 42.03 44.03
CDY38066 Canola cytosol 42.03 44.03
CDX99315 Canola cytosol 35.95 43.96
CDY48688 Canola cytosol 37.47 43.53
CDX87810 Canola cytosol 41.52 43.5
CDX79746 Canola cytosol 39.49 41.94
CDX94448 Canola cytosol 40.25 41.09
CDY14813 Canola cytosol 34.94 39.32
CDY06885 Canola cytosol 32.41 38.67
CDY71336 Canola cytosol 25.57 36.73
CDX67573 Canola cytosol 28.1 36.51
CDY34585 Canola cytosol 31.14 28.81
CDY21087 Canola cytosol 31.14 28.81
CDX98005 Canola cytosol 30.89 28.57
CDY19392 Canola cytosol 30.38 28.1
CDX83847 Canola cytosol 30.63 27.56
CDX71774 Canola cytosol 24.81 27.45
CDY19213 Canola cytosol 30.38 27.15
CDY26159 Canola cytosol 30.38 27.15
CDY62715 Canola cytosol 24.56 26.72
CDX96721 Canola cytosol 29.62 26.71
CDY56730 Canola cytosol 24.3 26.67
CDX67843 Canola cytosol 24.3 26.67
CDY33033 Canola nucleus 34.43 25.14
CDY42404 Canola cytosol 27.09 25.06
CDY52344 Canola cytosol 25.06 24.57
CDX80274 Canola nucleus 33.92 24.41
Protein Annotations
MapMan:20.2.2.1.1Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078FL77UniProt:A0A078FL77InterPro:Actin
InterPro:Arp2EnsemblPlants:CDY13674ProteinID:CDY13674ProteinID:CDY13674.1GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005856
GO:GO:0005885GO:GO:0007015GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0034314
EnsemblPlantsGene:GSBRNA2T00078097001PFAM:PF00022PRINTS:PR00190PANTHER:PTHR11937PANTHER:PTHR11937:SF149SMART:SM00268
SUPFAM:SSF53067UniParc:UPI0004EE5954::::
Description
BnaA06g32490DBnaA06g32490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL77]
Coordinates
chrLK032037:-:546475..549223
Molecular Weight (calculated)
44890.2 Da
IEP (calculated)
5.336
GRAVY (calculated)
-0.276
Length
395 amino acids
Sequence
(BLAST)
001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQL KDIVVGETCA ELRHQLDINY PVHNGIVQNW EDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI GKATSSYYDY KRECELGLET TILVKNYTLP DGRVIKVGTE RFQAPEALFT PELIDVEGDG MADMVFRCIQ EMDIDNRMTL
301: YQHIVLSGGS TMYPGLPSRL EKEIQDRYLD TVLKGNKDGL KKLRLRIEDP PRRKHMVYLG GAVLAGIMKD APEFWINRED YLEEGIGCLN KMSQA
Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)
001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA
Arabidopsis Description
ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.