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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER93954 Sorghum cytosol 95.76 95.76
Zm00001d032480_P002 Maize plasma membrane, plastid 95.49 95.49
Zm00001d013873_P001 Maize plasma membrane, plastid 95.49 95.49
HORVU1Hr1G047440.2 Barley cytosol 95.49 95.49
TraesCS1D01G177400.1 Wheat cytosol 95.49 95.49
TraesCS1B01G201400.1 Wheat cytosol 95.49 95.49
Os10t0510000-01 Rice plastid 95.23 95.23
CDY56544 Canola cytosol 94.96 94.96
CDX81140 Canola cytosol 94.96 94.96
GSMUA_Achr1P05990_001 Banana plasma membrane 94.69 94.69
CDY40061 Canola cytosol 88.59 94.62
CDX85794 Canola cytosol 88.59 94.62
CDY21607 Canola cytosol 94.43 94.43
CDX69885 Canola cytosol 94.43 94.43
CDY30296 Canola cytosol 88.06 94.05
CDY31972 Canola cytosol 88.06 94.05
GSMUA_Achr1P20200_001 Banana cytosol 85.68 93.08
CDX78202 Canola cytosol 92.31 92.31
CDY30846 Canola cytosol 92.31 92.31
CDY01102 Canola cytosol 92.31 92.31
CDY08455 Canola cytosol 92.04 92.04
CDX76191 Canola cytosol 92.04 92.04
CDX73527 Canola cytosol 85.94 91.78
CDX82985 Canola cytosol 91.78 91.78
CDY21777 Canola cytosol 91.78 91.78
CDY38066 Canola cytosol 91.78 91.78
CDX99111 Canola cytosol 91.78 91.78
CDX71119 Canola cytosol 91.78 91.78
CDX74944 Canola cytosol 91.78 91.78
CDX91373 Canola cytosol 91.78 91.78
CDX88698 Canola cytosol 91.78 91.78
CDX86081 Canola cytosol 91.78 91.78
CDX82326 Canola cytosol 91.78 91.78
CDX99315 Canola cytosol 78.51 91.64
CDY18545 Canola cytosol 91.51 91.51
CDY53444 Canola cytosol 91.51 91.51
CDX92272 Canola cytosol 91.51 91.51
CDX95498 Canola cytosol 91.51 91.51
CDY61982 Canola cytosol 91.25 91.25
CDX93360 Canola cytosol 80.11 91.24
CDY07779 Canola cytosol 85.15 91.19
CDY65255 Canola cytosol 79.84 90.94
CDY48688 Canola cytosol 81.96 90.88
CDX92271 Canola cytosol 76.13 90.54
CDX94448 Canola cytosol 89.39 87.08
CDX79746 Canola cytosol 85.15 86.29
TraesCS1A01G179000.1 Wheat cytosol 90.45 75.78
CDY71336 Canola cytosol 52.79 72.36
CDY14813 Canola cytosol 67.11 72.08
CDY06885 Canola cytosol 61.8 70.39
CDX67573 Canola cytosol 52.25 64.8
CDY33033 Canola nucleus 74.01 51.57
CDX80274 Canola nucleus 72.94 50.09
CDY00172 Canola cytosol 43.24 41.9
CDY20066 Canola cytosol 43.24 41.9
CDY52404 Canola cytosol 43.5 41.52
CDY13674 Canola cytosol 43.5 41.52
CDY62715 Canola cytosol 37.14 38.57
CDX71774 Canola cytosol 36.34 38.38
CDX67843 Canola cytosol 36.6 38.33
CDY56730 Canola cytosol 36.6 38.33
CDX96721 Canola cytosol 43.5 37.44
CDX83847 Canola cytosol 43.5 37.36
CDY26159 Canola cytosol 43.77 37.33
CDY19213 Canola cytosol 43.77 37.33
CDY52344 Canola cytosol 36.87 34.49
CDY21087 Canola cytosol 37.93 33.49
CDX98005 Canola cytosol 37.4 33.02
CDY34585 Canola cytosol 37.14 32.79
CDY19392 Canola cytosol 37.14 32.79
CDY42404 Canola cytosol 32.63 28.81
Protein Annotations
EnsemblPlants:CDX87810EnsemblPlantsGene:GSBRNA2T00146949001Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078DEZ7InterPro:Actin
InterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937PANTHER:PTHR11937:SF252PFAM:PF00022PRINTS:PR00190
ProteinID:CDX87810ProteinID:CDX87810.1ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132SMART:SM00268
SUPFAM:SSF53067UniParc:UPI0004EE87FBMapMan:20.2.1:::
Description
BnaC06g08720D
Coordinates
chrLK031852:-:134108..136055
Molecular Weight (calculated)
41690.1 Da
IEP (calculated)
5.067
GRAVY (calculated)
-0.142
Length
377 amino acids
Sequence
(BLAST)
001: MAEAEEIQPL VVDNGTGMVK AGFAGDDAPR AVFPSIIGRP RHAGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFD VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: TFTTSAEREI VRDIKEKLSY VALDYEQEVE TAKSSSAIEK TYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYEESGPA IVHRKCF
Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.