Factsheet for Zm00001d032480_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93954	Sorghum	cytosol	99.73	99.73
Zm00001d013873_P001	Maize	plasma membrane, plastid	99.47	99.47
TraesCS1D01G177400.1	Wheat	cytosol	99.47	99.47
HORVU1Hr1G047440.2	Barley	cytosol	99.47	99.47
TraesCS1B01G201400.1	Wheat	cytosol	99.47	99.47
Os10t0510000-01	Rice	plastid	98.67	98.67
Zm00001d053177_P004	Maize	cytosol	98.14	98.14
Zm00001d035720_P002	Maize	cytosol	97.08	97.08
Zm00001d011086_P005	Maize	cytosol	97.08	97.08
GSMUA_Achr1P05990_001	Banana	plasma membrane	96.55	96.55
Zm00001d033790_P001	Maize	cytosol	96.02	96.02
Zm00001d013410_P001	Maize	cytosol	96.02	96.02
GSMUA_Achr1P20200_001	Banana	cytosol	88.06	95.68
CDX87810	Canola	cytosol	95.49	95.49
Zm00001d035722_P007	Maize	plasma membrane	97.08	95.06
Zm00001d019635_P001	Maize	cytosol	34.75	94.93
Zm00001d012277_P001	Maize	cytosol	94.16	94.41
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	93.9	94.15
Zm00001d034761_P002	Maize	cytosol	96.55	92.86
Zm00001d010159_P002	Maize	extracellular, plasma membrane	91.78	92.02
Zm00001d016605_P001	Maize	cytosol	38.46	91.77
Zm00001d016508_P001	Maize	cytosol	31.3	85.51
Zm00001d008746_P001	Maize	cytosol	62.33	85.45
Zm00001d019396_P001	Maize	cytosol	36.34	81.55
Zm00001d011087_P001	Maize	plastid	97.08	80.62
Zm00001d007792_P001	Maize	cytosol	55.44	79.17
TraesCS1A01G179000.1	Wheat	cytosol	94.16	78.89
Zm00001d003298_P001	Maize	cytosol	53.05	76.05
Zm00001d004087_P001	Maize	cytosol	41.11	71.76
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	96.82	61.86
Zm00001d022558_P001	Maize	cytosol	46.15	44.73
Zm00001d034421_P004	Maize	plastid	45.36	36.54
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	41.91	35.67
Zm00001d017106_P001	Maize	cytosol	38.99	33.95
Zm00001d049629_P002	Maize	nucleus	31.57	32.34
Zm00001d050981_P001	Maize	cytosol	38.46	31.59
Zm00001d014112_P003	Maize	cytosol	32.89	30.02
Zm00001d024059_P002	Maize	cytosol	33.95	29.77
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	16.71	27.27

Protein Annotations

EntrezGene:100381643	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	EMBL:BT061870	UniProt:C0HHR4	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	ProteinID:ONM05198.1	ProteinID:ONM05199.1	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI0001948565	EnsemblPlantsGene:Zm00001d032480	EnsemblPlants:Zm00001d032480_P002	EnsemblPlants:Zm00001d032480_T002	:	:

Description

Actin-7

Coordinates

chr1:-:228063148..228066312

Molecular Weight (calculated)

41714.1 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.164

Length

377 amino acids

Sequence
(BLAST)

001: MADSEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFS VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSFIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS RAEYEESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.