Factsheet for Zm00001d008652_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008906_P003
Zm00001d022558_P001
Zm00001d025835_P001
Zm00001d025836_P001
Zm00001d032131_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	Zm00001d008906_P003	AT1G29170.1	17267444
AT1G13180.1	Zm00001d025835_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d025836_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d032131_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d022558_P001	AT3G27000.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05970_001	Banana	cytosol	49.78	64.97
KRH59222	Soybean	cytosol	51.95	62.5
Zm00001d017106_P001	Maize	cytosol	67.97	36.26
Zm00001d050981_P001	Maize	cytosol	67.53	33.99
Zm00001d016508_P001	Maize	cytosol	19.91	33.33
VIT_01s0137g00280.t01	Wine grape	cytosol	61.47	33.18
Zm00001d016605_P001	Maize	cytosol	22.51	32.91
Zm00001d019635_P001	Maize	cytosol	19.48	32.61
PGSC0003DMT400027956	Potato	cytosol	58.44	31.32
Solyc04g024530.2.1	Tomato	cytosol	58.01	31.24
Solyc05g013940.2.1	Tomato	cytosol	58.01	31.24
KRH59228	Soybean	nucleus	57.58	31.07
AT1G13180.1	Thale cress	cytosol	56.71	30.68
CDY34585	Canola	cytosol	55.41	29.98
Bra016738.1-P	Field mustard	cytosol	54.98	29.74
Bra019815.1-P	Field mustard	cytosol	54.98	29.74
CDX98005	Canola	cytosol	54.98	29.74
CDY21087	Canola	cytosol	54.98	29.74
CDY19392	Canola	cytosol	54.55	29.51
Zm00001d019396_P001	Maize	cytosol	20.78	28.57
Zm00001d003298_P001	Maize	cytosol	23.81	20.91
Zm00001d004087_P001	Maize	cytosol	19.48	20.83
Zm00001d049629_P002	Maize	nucleus	32.03	20.11
Zm00001d007792_P001	Maize	cytosol	20.35	17.8
Zm00001d010159_P002	Maize	extracellular, plasma membrane	27.71	17.02
Zm00001d035720_P002	Maize	cytosol	27.71	16.98
Zm00001d053177_P004	Maize	cytosol	27.71	16.98
Zm00001d011086_P005	Maize	cytosol	27.71	16.98
Zm00001d012277_P001	Maize	cytosol	27.27	16.76
Zm00001d013873_P001	Maize	plasma membrane, plastid	27.27	16.71
Zm00001d033790_P001	Maize	cytosol	27.27	16.71
Zm00001d032480_P002	Maize	plasma membrane, plastid	27.27	16.71
Zm00001d013410_P001	Maize	cytosol	27.27	16.71
Zm00001d035722_P007	Maize	plasma membrane	27.71	16.62
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	26.41	16.22
Zm00001d034761_P002	Maize	cytosol	27.27	16.07
Zm00001d011087_P001	Maize	plastid	27.71	14.1
Zm00001d022558_P001	Maize	cytosol	20.78	12.34
Zm00001d034421_P004	Maize	plastid	22.94	11.32
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	27.71	10.85
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	19.05	9.93
Zm00001d024059_P002	Maize	cytosol	15.58	8.37
Zm00001d014112_P003	Maize	cytosol	14.72	8.23
Zm00001d008746_P001	Maize	cytosol	7.36	6.18

Protein Annotations

MapMan:35.1	UniProt:A0A1D6FEG1	ProteinID:AQK90358.1	InterPro:Actin	InterPro:Arp3	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0034314	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SUPFAM:SSF53067	UniParc:UPI0008430C16
EnsemblPlantsGene:Zm00001d008652	EnsemblPlants:Zm00001d008652_P001	EnsemblPlants:Zm00001d008652_T001	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:15988802..16000441

Molecular Weight (calculated)

25301.4 Da

IEP (calculated)

6.347

GRAVY (calculated)

0.112

Length

231 amino acids

Sequence
(BLAST)

001: MGFAGNVEPC FISPTVVAVN ESFSGSAQPA ARGTPARGNW LAQHSAGVMA DLEALARSRA SSSHNLSYPI RKGQVGAPAV YCRVQLLVFF FATLLTIDLG
101: WGELFQVENW DTMERFWQQC IFNYLSCDLE DHYFLLTESP LTAPETREYT GEIMFKTFNV PSLYIAVQPV LALAAGYTTT KARHVDIPYL PMLVPPKKWK
201: GVLHGKTSGS LAIADVGDGF KAANVLGETL F

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.