Factsheet for Zm00001d024059_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017660_P021
Zm00001d051507_P007
Zm00001d052325_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	Zm00001d017660_P021	AT3G12810.1	17142478
AT3G33520.1	Zm00001d051507_P007	AT3G12810.1	17142478
AT3G33520.1	Zm00001d017660_P021	AT3G12810.1	17470967
AT3G33520.1	Zm00001d051507_P007	AT3G12810.1	17470967
AT3G33520.1	Zm00001d052325_P001	AT5G37055.1	17142478
AT3G33520.1	Zm00001d052325_P001	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79631	Sorghum	cytosol	93.02	92.59
TraesCS2B01G597500.1	Wheat	cytosol	87.21	87.21
TraesCS2D01G600800.1	Wheat	cytosol	86.98	86.98
HORVU0Hr1G005770.1	Barley	cytosol	86.98	86.98
TraesCS2A01G585700.1	Wheat	cytosol	86.74	86.74
Os01t0269900-01	Rice	cytosol	86.51	86.71
TraesCS1B01G333100.1	Wheat	cytosol	86.28	86.28
GSMUA_AchrUn_...	Banana	cytosol	73.49	72.64
VIT_11s0016g05490.t01	Wine grape	cytosol	69.07	68.59
Bra030818.1-P	Field mustard	cytosol	34.19	66.22
KRH61849	Soybean	cytosol, nucleus	66.05	65.14
CDY42404	Canola	cytosol	64.19	64.64
Solyc05g018600.2.1	Tomato	cytosol	65.12	63.93
PGSC0003DMT400038724	Potato	cytosol	64.88	63.7
AT3G33520.1	Thale cress	cytosol	62.33	63.66
Zm00001d010159_P002	Maize	extracellular, plasma membrane	29.77	34.04
Zm00001d012277_P001	Maize	cytosol	29.77	34.04
Zm00001d032480_P002	Maize	plasma membrane, plastid	29.77	33.95
Zm00001d013873_P001	Maize	plasma membrane, plastid	29.77	33.95
Zm00001d008746_P001	Maize	cytosol	21.63	33.82
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	29.53	33.78
Zm00001d053177_P004	Maize	cytosol	29.53	33.69
Zm00001d035720_P002	Maize	cytosol	29.53	33.69
Zm00001d011086_P005	Maize	cytosol	29.53	33.69
Zm00001d013410_P001	Maize	cytosol	29.07	33.16
Zm00001d033790_P001	Maize	cytosol	29.07	33.16
Zm00001d035722_P007	Maize	plasma membrane	29.53	32.99
Zm00001d034761_P002	Maize	cytosol	29.77	32.65
Zm00001d019635_P001	Maize	cytosol	10.23	31.88
Zm00001d016508_P001	Maize	cytosol	9.53	29.71
Zm00001d016605_P001	Maize	cytosol	10.47	28.48
Zm00001d019396_P001	Maize	cytosol	10.93	27.98
Zm00001d011087_P001	Maize	plastid	29.53	27.97
Zm00001d022558_P001	Maize	cytosol	24.88	27.51
Zm00001d007792_P001	Maize	cytosol	16.74	27.27
Zm00001d003298_P001	Maize	cytosol	16.28	26.62
Zm00001d004087_P001	Maize	cytosol	13.26	26.39
Zm00001d017106_P001	Maize	cytosol	24.88	24.71
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	24.88	24.15
Zm00001d050981_P001	Maize	cytosol	25.35	23.75
Zm00001d049629_P002	Maize	nucleus	18.84	22.01
Zm00001d014112_P003	Maize	cytosol	20.93	21.79
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	28.84	21.02
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	8.37	15.58
Zm00001d034421_P004	Maize	plastid	15.12	13.89

Protein Annotations

EntrezGene:100284728	MapMan:12.4.4.4	ProteinID:AQK40632.1	InterPro:Actin	InterPro:Arp6	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338
GO:GO:0006355	GO:GO:0006950	GO:GO:0006970	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845
GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0016043	UniProt:K7TPE9	PFAM:PF00022
PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000220F4E3	EnsemblPlantsGene:Zm00001d024059
EnsemblPlants:Zm00001d024059_P002	EnsemblPlants:Zm00001d024059_T002	SEG:seg	:	:	:

Description

Actin-related protein 6

Coordinates

chr10:-:40715440..40719177

Molecular Weight (calculated)

48251.0 Da

IEP (calculated)

5.342

GRAVY (calculated)

-0.213

Length

430 amino acids

Sequence
(BLAST)

001: MTGGSGVVVI DNGGGLLKAG FGGDNDPIAV VPNCMAKPPG GNASSKKWLV ADQLQAEDVD VTGMTLKRPI DRGYLINTEV QRDVWERVLR NLLQVDPTNS
101: SLLLVEPMFN PPAIQHATDE LVFEEFGFNS LYVADGPSLV HLYEASRQPM MFRAQCSLVV DCGFSFTHAS PVLQNFTLNY GVRRMDLGGK ALTNYLKELV
201: SYRSLNVMDE TLLIDDAKEK LCFVSLDVPG DLHLARLSFK DNPFRCSYIL PDGITYKKGF VKDMDEALRY RTLPQVSDSK DHGMDTNKSE DRKKAELSQN
301: EFVLTNERFL VPEMLFHPID LGINQAGLAE CIVRAVQACH PYLQPVLFES IILTGGSTLF PRFTERLERE LRPLVPDDYK VKITRQENPI FGVWRGGSIL
401: ASSPDFESMC ITKSEYEEMG SARCRRRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.