Factsheet for HORVU0Hr1G005770.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G047490.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	HORVU5Hr1G047490.2	AT5G37055.1	17142478
AT3G33520.1	HORVU5Hr1G047490.2	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G597500.1	Wheat	cytosol	97.91	97.91
TraesCS2A01G585700.1	Wheat	cytosol	97.91	97.91
TraesCS2D01G600800.1	Wheat	cytosol	97.67	97.67
TraesCS1B01G333100.1	Wheat	cytosol	97.44	97.44
OQU79631	Sorghum	cytosol	87.91	87.5
Zm00001d024059_P002	Maize	cytosol	86.98	86.98
Os01t0269900-01	Rice	cytosol	86.05	86.25
GSMUA_AchrUn_...	Banana	cytosol	73.49	72.64
VIT_11s0016g05490.t01	Wine grape	cytosol	68.14	67.67
Bra030818.1-P	Field mustard	cytosol	33.49	64.86
AT3G33520.1	Thale cress	cytosol	63.02	64.37
KRH61849	Soybean	cytosol, nucleus	64.88	63.99
CDY42404	Canola	cytosol	63.02	63.47
Solyc05g018600.2.1	Tomato	cytosol	63.49	62.33
PGSC0003DMT400038724	Potato	cytosol	63.26	62.1
HORVU1Hr1G074350.1	Barley	cytosol	29.07	33.24
HORVU1Hr1G047440.2	Barley	cytosol	29.07	33.16
HORVU5Hr1G117900.1	Barley	cytosol	28.6	32.63
HORVU1Hr1G002840.6	Barley	plasma membrane	28.84	30.47
HORVU3Hr1G083380.1	Barley	cytosol	27.44	30.26
HORVU4Hr1G008310.9	Barley	cytosol	27.91	29.48
HORVU5Hr1G000180.1	Barley	cytosol, nucleus	27.67	29.1
HORVU5Hr1G039850.3	Barley	mitochondrion	28.14	26.02
HORVU6Hr1G053910.4	Barley	cytosol	24.88	24.21
HORVU6Hr1G032610.8	Barley	cytosol	23.95	21.41
HORVU7Hr1G074460.5	Barley	cytosol	21.63	21.33
HORVU4Hr1G007240.3	Barley	cytosol	23.02	21.11
HORVU5Hr1G102220.2	Barley	plastid	20.93	20.55
HORVU5Hr1G088030.1	Barley	plastid	24.19	20.47

Protein Annotations

MapMan:12.4.4.4	InterPro:Actin	InterPro:Arp6	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006950
GO:GO:0006970	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058
GO:GO:0009266	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:HORVU0Hr1G005770	EnsemblPlants:HORVU0Hr1G005770.1	UniProt:M0Y113	PFAM:PF00022
PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000295F865	SEG:seg

Description

No Description!

Coordinates

chrchrUn:+:31182453..31186412

Molecular Weight (calculated)

48111.5 Da

IEP (calculated)

5.342

GRAVY (calculated)

-0.220

Length

430 amino acids

Sequence
(BLAST)

001: MTGGSRVVVI DNGGGLLKAG FGGDNDPIAV VPNCIAKSPG SNANSKKWLA ADQLQAQDVD VTGVTLRRPI DRGYLINTEV QREVWERVLR GLLQVDPTNS
101: SLLLVEPQFN PPALQHATDE LVFEEFGFNS LCVADAPSLV HLYEASRQPS LFHSQCSLVV DCGFSFTHAS PVLQNFTLNY AVRRMDLGGK ALTNYLKELV
201: SYRSLNVMDE TLLIDDAKEK LCFVSLDVPH DLRLASLSFK DNPFRCSYIL PDGITYKKGF VKDLDEARRY CSLPVEGELD KKDGDRDIDK DRKKPELSQN
301: EFALTNERFL VPEMLFHPID LGMNQAGLAE CIVRAAQACH PYIQPVLYQS IILTGGSTLF PRFAERLQRE LRPLVPEEYQ VKIISQENPI LGVWRGGSVL
401: ASSPDFDSMC VTKSEYEEMG SARCRRRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.