Factsheet for Zm00001d049629_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008906_P003
Zm00001d022558_P001
Zm00001d025835_P001
Zm00001d025836_P001
Zm00001d032131_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	Zm00001d008906_P003	AT1G29170.1	17267444
AT1G13180.1	Zm00001d025835_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d025836_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d032131_P001	AT1G29170.1	17267444
AT1G13180.1	Zm00001d022558_P001	AT3G27000.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24330	Sorghum	cytosol	91.58	77.47
TraesCS7A01G311700.1	Wheat	cytosol	83.15	70.18
HORVU7Hr1G074460.5	Barley	cytosol	83.15	70.18
TraesCS7B01G211500.1	Wheat	cytosol	82.61	69.72
TraesCS7D01G308200.1	Wheat	cytosol	83.15	67.85
Solyc05g013940.2.1	Tomato	cytosol	70.11	60.14
VIT_01s0137g00280.t01	Wine grape	cytosol	69.57	59.81
Solyc04g024530.2.1	Tomato	cytosol	69.29	59.44
PGSC0003DMT400027956	Potato	cytosol	69.57	59.4
AT1G13180.1	Thale cress	cytosol	68.75	59.25
CDY21087	Canola	cytosol	68.75	59.25
Bra016738.1-P	Field mustard	cytosol	68.48	59.02
Zm00001d017106_P001	Maize	cytosol	69.29	58.89
CDX98005	Canola	cytosol	68.21	58.78
Bra019815.1-P	Field mustard	cytosol	68.21	58.78
CDY19392	Canola	cytosol	67.93	58.55
KRH59228	Soybean	nucleus	67.93	58.41
CDY34585	Canola	cytosol	67.39	58.08
GSMUA_Achr8P01270_001	Banana	cytosol	66.03	56.91
Zm00001d050981_P001	Maize	cytosol	67.66	54.25
Os08t0128300-01	Rice	cytosol	22.83	46.67
KRH59222	Soybean	cytosol	19.02	36.46
Zm00001d035720_P002	Maize	cytosol	32.88	32.1
Zm00001d011086_P005	Maize	cytosol	32.88	32.1
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	20.11	32.03
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	32.34	31.65
Zm00001d012277_P001	Maize	cytosol	32.34	31.65
Zm00001d053177_P004	Maize	cytosol	32.34	31.57
Zm00001d033790_P001	Maize	cytosol	32.34	31.57
Zm00001d032480_P002	Maize	plasma membrane, plastid	32.34	31.57
Zm00001d013873_P001	Maize	plasma membrane, plastid	32.34	31.57
Zm00001d013410_P001	Maize	cytosol	32.34	31.57
Zm00001d035722_P007	Maize	plasma membrane	32.88	31.43
Zm00001d010159_P002	Maize	extracellular, plasma membrane	31.52	30.85
Zm00001d008746_P001	Maize	cytosol	22.28	29.82
Zm00001d034761_P002	Maize	cytosol	31.52	29.59
Zm00001d004087_P001	Maize	cytosol	16.3	27.78
Zm00001d019396_P001	Maize	cytosol	12.5	27.38
Zm00001d007792_P001	Maize	cytosol	19.29	26.89
Zm00001d011087_P001	Maize	plastid	32.88	26.65
Zm00001d022558_P001	Maize	cytosol	27.45	25.96
Zm00001d016508_P001	Maize	cytosol	9.51	25.36
Zm00001d003298_P001	Maize	cytosol	17.66	24.71
Zm00001d016605_P001	Maize	cytosol	10.6	24.68
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	26.9	22.35
Zm00001d014112_P003	Maize	cytosol	24.73	22.03
Zm00001d019635_P001	Maize	cytosol	8.15	21.74
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	32.61	20.34
Zm00001d024059_P002	Maize	cytosol	22.01	18.84
Zm00001d034421_P004	Maize	plastid	14.13	11.11

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	UniProt:A0A1D6PWM3	ProteinID:AQK50946.1	InterPro:Actin
InterPro:Arp3	GO:GO:0000166	GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856
GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653	GO:GO:0009825	GO:GO:0009987
GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0034314	GO:GO:0040007
PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000845789A
EnsemblPlantsGene:Zm00001d049629	EnsemblPlants:Zm00001d049629_P002	EnsemblPlants:Zm00001d049629_T002	SEG:seg	:	:

Description

Actin-related protein 3

Coordinates

chr4:+:38133648..38138585

Molecular Weight (calculated)

41522.2 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.235

Length

368 amino acids

Sequence
(BLAST)

001: MRGQPQVVKI NSCSSTSTCL ILFSVLQVYD WDTMERFWQQ CIFNYLRCNP EEHYFLLTDS PVSTPESREC TGEIMFETFN VPGLYISVQS VLSLSAGYAY
101: LKSLSDDDSD TRSDMTGVVV DIGDGAPQIV PVVNGYVIGS SIKSFPSSGS DVTQFISQLL QERGELLAPE DSLDISRKVK EVYCYTCSDI VKEFKKHDKK
201: PDKYIKHWSA VKPKTGVPYT IDIGYERFLG PEIFFNPEIY SADFSTPLPE LIDNCVQSAP IDTRRALYKN IVLSGGSTMF KDFHKRLQTD IKKIVDDRVA
301: ATNARHRVEV RPIEVNVVAH PIQSYAVWFG GSVAASNPEF FEFCHTKEEY EEHGASICRT SPVFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.