Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019635_P001 | Maize | cytosol | 81.16 | 81.16 |
| Zm00001d016605_P001 | Maize | cytosol | 83.33 | 72.78 |
| Zm00001d019396_P001 | Maize | cytosol | 88.41 | 72.62 |
| PGSC0003DMT400076499 | Potato | cytosol | 84.78 | 60.62 |
| Zm00001d003298_P001 | Maize | cytosol | 86.23 | 45.25 |
| CDX92271 | Canola | cytosol | 82.61 | 35.96 |
| Zm00001d004087_P001 | Maize | cytosol | 55.07 | 35.19 |
| PGSC0003DMT400088088 | Potato | cytosol | 49.28 | 35.05 |
| CDX99315 | Canola | cytosol | 81.88 | 34.98 |
| Bra022356.1-P | Field mustard | cytosol | 81.16 | 34.67 |
| GSMUA_Achr5P29190_001 | Banana | cytosol | 86.96 | 34.48 |
| GSMUA_Achr9P08850_001 | Banana | cytosol | 86.96 | 34.38 |
| GSMUA_Achr11P... | Banana | cytosol | 85.51 | 33.81 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 66.67 | 33.58 |
| Zm00001d012277_P001 | Maize | cytosol | 89.86 | 32.98 |
| EES01810 | Sorghum | cytosol | 89.86 | 32.98 |
| Zm00001d007792_P001 | Maize | cytosol | 62.32 | 32.58 |
| Zm00001d042731_P002 | Maize | extracellular, plasma membrane, plastid | 88.41 | 32.45 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 82.61 | 32.29 |
| GSMUA_Achr7P10410_001 | Banana | cytosol | 86.96 | 31.83 |
| GSMUA_Achr10P... | Banana | cytosol | 86.96 | 31.83 |
| GSMUA_Achr2P16160_001 | Banana | cytosol | 86.96 | 31.83 |
| GSMUA_Achr9P03170_001 | Banana | cytosol | 86.23 | 31.65 |
| KRH43389 | Soybean | cytosol | 86.23 | 31.57 |
| GSMUA_Achr6P25350_001 | Banana | cytosol | 86.23 | 31.57 |
| GSMUA_Achr8P16150_001 | Banana | cytosol | 86.23 | 31.57 |
| KRH59535 | Soybean | cytosol | 86.23 | 31.57 |
| KRH64098 | Soybean | cytosol | 86.23 | 31.57 |
| PGSC0003DMT400010174 | Potato | cytosol | 86.23 | 31.57 |
| PGSC0003DMT400047481 | Potato | cytosol | 86.23 | 31.57 |
| Zm00001d013410_P001 | Maize | cytosol | 86.23 | 31.57 |
| Zm00001d011086_P005 | Maize | cytosol | 86.23 | 31.57 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 86.23 | 31.57 |
| Solyc11g005330.1.1 | Tomato | nucleus | 86.23 | 31.57 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 86.23 | 31.57 |
| CDY21607 | Canola | cytosol | 86.23 | 31.57 |
| Zm00001d053177_P004 | Maize | cytosol | 86.23 | 31.57 |
| AT5G09810.1 | Thale cress | cytosol | 86.23 | 31.57 |
| Bra028615.1-P | Field mustard | cytosol | 86.23 | 31.57 |
| CDX69885 | Canola | cytosol | 86.23 | 31.57 |
| CDX81140 | Canola | cytosol | 86.23 | 31.57 |
| Zm00001d035720_P002 | Maize | cytosol | 86.23 | 31.57 |
| GSMUA_Achr8P02660_001 | Banana | cytosol | 86.23 | 31.57 |
| CDY56544 | Canola | cytosol | 86.23 | 31.57 |
| Zm00001d033790_P001 | Maize | cytosol | 86.23 | 31.57 |
| GSMUA_Achr3P02960_001 | Banana | cytosol | 85.51 | 31.3 |
| Zm00001d013873_P001 | Maize | plasma membrane, plastid | 85.51 | 31.3 |
| Bra006033.1-P | Field mustard | cytosol | 85.51 | 31.3 |
| Zm00001d032480_P002 | Maize | plasma membrane, plastid | 85.51 | 31.3 |
| CDY40061 | Canola | cytosol | 79.71 | 31.16 |
| CDX85794 | Canola | cytosol | 79.71 | 31.16 |
| CDY30296 | Canola | cytosol | 79.71 | 31.16 |
| CDY31972 | Canola | cytosol | 79.71 | 31.16 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 84.78 | 31.03 |
| Solyc01g104770.2.1 | Tomato | nucleus | 84.78 | 31.03 |
| GSMUA_Achr11P... | Banana | cytosol | 84.78 | 31.03 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 84.78 | 31.03 |
| Zm00001d035722_P007 | Maize | plasma membrane | 86.23 | 30.91 |
| Bra009081.1-P | Field mustard | cytosol | 78.99 | 30.88 |
| Zm00001d010159_P002 | Maize | extracellular, plasma membrane | 83.33 | 30.59 |
| Zm00001d034761_P002 | Maize | cytosol | 86.23 | 30.36 |
| AT3G18780.3 | Thale cress | cytosol | 82.61 | 30.24 |
| CDX82326 | Canola | cytosol | 82.61 | 30.24 |
| CDX92272 | Canola | cytosol | 82.61 | 30.24 |
| Solyc04g071260.2.1 | Tomato | plastid | 82.61 | 30.24 |
| CDX95498 | Canola | cytosol | 82.61 | 30.24 |
| CDY18545 | Canola | cytosol | 82.61 | 30.24 |
| CDY61982 | Canola | cytosol | 82.61 | 30.24 |
| AT1G49240.1 | Thale cress | cytosol | 81.88 | 29.97 |
| GSMUA_Achr10P... | Banana | cytosol | 58.7 | 29.45 |
| PGSC0003DMT400022210 | Potato | cytosol | 70.29 | 26.36 |
| PGSC0003DMT400022205 | Potato | cytosol | 69.57 | 26.23 |
| PGSC0003DMT400074882 | Potato | cytosol | 70.29 | 26.22 |
| Zm00001d011087_P001 | Maize | plastid | 86.23 | 26.21 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 86.23 | 25.87 |
| PGSC0003DMT400074887 | Potato | cytosol | 65.22 | 24.32 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 57.25 | 23.8 |
| Zm00001d034421_P004 | Maize | plastid | 79.71 | 23.5 |
| Zm00001d004855_P002 | Maize | cytoskeleton, cytosol, nucleus | 86.23 | 20.17 |
| Zm00001d008652_P001 | Maize | endoplasmic reticulum, plastid | 33.33 | 19.91 |
| Zm00001d022558_P001 | Maize | cytosol | 49.28 | 17.48 |
| Zm00001d017106_P001 | Maize | cytosol | 42.03 | 13.39 |
| Zm00001d050981_P001 | Maize | cytosol | 41.3 | 12.42 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 36.23 | 11.29 |
| Zm00001d008746_P001 | Maize | cytosol | 21.74 | 10.91 |
| Zm00001d014112_P003 | Maize | cytosol | 29.71 | 9.93 |
| Zm00001d024059_P002 | Maize | cytosol | 29.71 | 9.53 |
| Zm00001d049629_P002 | Maize | nucleus | 25.36 | 9.51 |
| GSMUA_Achr6P34320_001 | Banana | cytosol | 7.97 | 4.51 |
| PGSC0003DMT400076501 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d016508_P001 | EnsemblPlants:Zm00001d016508_T001 | EnsemblPlantsGene:Zm00001d016508 | Gene3D:3.30.420.40 | InterPro:Actin | PANTHER:PTHR11937 |
| PANTHER:PTHR11937:SF205 | PFAM:PF00022 | PRINTS:PR00190 | ProteinID:AQK70992.1 | SMART:SM00268 | SUPFAM:SSF53067 |
| UniParc:UPI0008446B77 | UniProt:A0A1D6H8D7 | MapMan:35.1 | : | : | : |
Description
Actin-7
Coordinates
chr5:+:165320066..165320645
Molecular Weight (calculated)
15578.0 Da
IEP (calculated)
5.986
GRAVY (calculated)
-0.161
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEEDVQPLM CDNGTGMVKA GFAGDDAPRA VFPSIVGRPR HTGVMSKRGI LTLKYPIEHG IVGNWDDMEK IWHHTFYNEL RVAPEEHPIL LTEAPLNPKA
101: NMEKMTQIMF ETFNCPTMYV AIQAVLYLMT VTQGSRQI
101: NMEKMTQIMF ETFNCPTMYV AIQAVLYLMT VTQGSRQI
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.