Factsheet for Zm00001d040038_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014053_P001	Maize	cytosol	40.33	93.54
Zm00001d008517_P001	Maize	cytosol	96.72	92.48
Os01t0125800-01	Rice	plasma membrane	91.64	91.64
TraesCS3D01G031900.1	Wheat	cytosol	86.23	86.23
TraesCS3B01G034400.1	Wheat	cytosol, golgi	86.07	86.07
TraesCS3A01G047800.1	Wheat	cytosol	86.07	86.07
HORVU3Hr1G004510.1	Barley	cytosol	85.9	85.76
Zm00001d047714_P001	Maize	plasma membrane	40.82	83.84
Zm00001d038078_P001	Maize	cytosol	23.44	82.66
Zm00001d008768_P001	Maize	cytosol	23.44	82.66
GSMUA_Achr10P...	Banana	cytosol	75.57	75.7
GSMUA_Achr3P20980_001	Banana	cytosol	69.34	72.81
VIT_17s0000g02670.t01	Wine grape	cytosol	71.8	71.92
Zm00001d042097_P001	Maize	cytosol	8.2	70.42
KRH60498	Soybean	cytosol	69.02	69.02
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	68.85	68.85
Solyc03g119090.2.1	Tomato	cytosol, extracellular	68.52	68.64
PGSC0003DMT400014412	Potato	cytosol	68.36	68.47
AT3G18060.1	Thale cress	cytosol	68.2	68.31
CDY49616	Canola	cytosol	62.13	67.92
HORVU3Hr1G021490.1	Barley	cytosol	4.75	67.44
Bra022278.1-P	Field mustard	cytosol	66.89	67.0
KRG90988	Soybean	cytosol	66.56	66.56
CDX92192	Canola	cytosol	64.43	65.94
KRH35765	Soybean	golgi	45.57	63.76
AT2G01330.1	Thale cress	cytosol	63.11	63.01
CDY25939	Canola	cytosol	62.3	61.59
CDY41077	Canola	cytosol	62.13	61.43
Bra017456.1-P	Field mustard	cytosol	62.13	61.43
Zm00001d029295_P001	Maize	cytosol	10.16	38.99

Protein Annotations

EntrezGene:100192950	Gene3D:2.130.10.10	MapMan:35.1	UniProt:B6UDC2	EMBL:BT085205	EMBL:EU975237
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
ProteinID:ONM30361.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856
PANTHER:PTHR19856:SF4	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000182ED0F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d040038	EnsemblPlants:Zm00001d040038_P001	EnsemblPlants:Zm00001d040038_T001

Description

Actin-interacting protein 1-2

Coordinates

chr3:-:24228908..24237811

Molecular Weight (calculated)

66290.4 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.171

Length

610 amino acids

Sequence
(BLAST)

001: MAQLVETYAC SPATERGRGI LLAGDPKTDT IAYCTGRSVI IRRLDAPLDA WAYPDHAYPT TVARFSPNGE WVASADASGC VRVWGRYGDR ALKAEFRPLS
101: GRVDDLRWSP DGLRIVVSGD GKGKSFVRAF VWDSGSTVGE FDGHSKRVLS CDFKPTRPFR IVTCGEDFLA NFYEGPPFKF KHSIRDHSNF VNCIRYAPDG
201: SKFITVSSDK KGLIYDGKTG EKIGELSTEG NHTGSIYAVS WSPDSKQVLT VSADKSAKVW DIMEDASGKL NRTLSCPGIG GVDDMLVGCL WQNDHLVTVS
301: LGGTFNVFSA SNPDQEPVTF AGHLKTVSSL VFFPQSSPRT ILSTSYDGVI MRWIQGVGFG GRLVRRNNTQ IKCFAAVEEE LVTSGYDNKV FRIPLNGNQC
401: GDAESVDIGG QPNALNLAIQ KPEFALITTD SGIVLLHNSK VISTTKVNYA ITSSSVSPDG TEAVVGAQDG KLRIYSISGD TLTEEALLEK HRGAITSIHY
501: SPDVSMFASA DTNREAVVWD RASREVKLKN MLYHTARINS LAWSPDSRLV ATGSLDTCAI VYEIDKPVAS RVTIKGAHLG GVHGLTFLDN DILVTAGEDA
601: CIRVWKVVQQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.