CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35765	Soybean	golgi	63.44	88.76
GSMUA_Achr10P...	Banana	cytosol	72.62	72.74
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	72.13	72.13
KRH60498	Soybean	cytosol	71.8	71.8
AT2G01330.1	Thale cress	cytosol	69.67	69.56
GSMUA_Achr3P20980_001	Banana	cytosol	66.23	69.54
Bra017456.1-P	Field mustard	cytosol	69.18	68.4
CDY25939	Canola	cytosol	69.18	68.4
CDY41077	Canola	cytosol	69.18	68.4
TraesCS3A01G047800.1	Wheat	cytosol	67.54	67.54
TraesCS3D01G031900.1	Wheat	cytosol	67.38	67.38
HORVU3Hr1G004510.1	Barley	cytosol	67.38	67.27
TraesCS3B01G034400.1	Wheat	cytosol, golgi	67.21	67.21
Os01t0125800-01	Rice	plasma membrane	67.05	67.05
Zm00001d040038_P001	Maize	cytosol, extracellular	66.56	66.56
Zm00001d008517_P001	Maize	cytosol	66.89	63.95
Zm00001d008768_P001	Maize	cytosol	18.03	63.58
Zm00001d038078_P001	Maize	cytosol	18.03	63.58
Zm00001d014053_P001	Maize	cytosol	27.38	63.5
HORVU3Hr1G021490.1	Barley	cytosol	4.43	62.79
KXG32003	Sorghum	cytosol	67.21	60.92
Zm00001d042097_P001	Maize	cytosol	7.05	60.56
Zm00001d047714_P001	Maize	plasma membrane	28.36	58.25
Zm00001d029295_P001	Maize	cytosol	9.02	34.59

Protein Annotations

EntrezGene:100798693	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02012657	EnsemblPlantsGene:GLYMA_20G126400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030042	GO:GO:0030836
GO:GO:0030864	GO:GO:0042643	GO:GO:0051015	UniProt:I1NFV4	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRG90988	ProteinID:KRG90988	ProteinID:KRG90988.1	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233DC8E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

hypothetical protein

Coordinates

chr20:-:36853601..36862285

Molecular Weight (calculated)

66279.8 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.060

Length

610 amino acids

Sequence
(BLAST)

001: MATLSETYAC APSTERGRGI LISGDAKTNN ILYCTGRSVI IRNLDNPLQV WVYCEHAYPV TVARYSPNGE WVASADISGT VRIWGTHNEF VLKNEFRVLS
101: GRIDDLQWSF DGMRIVACGD GKGKSFVRAF MWDSGSTVGD FDGHSRRVLS CAFKPTRPFR IATCGEDFLA NFYDGPPFKF NMSIRDHSNF VNCVRFSPDG
201: SKFITVSSDR KGIIYDGKTG NKLGELSTED GHKGSIYAVS WSPDSKQVLT VSADKSAKVW NVVEDGSSGT VNKTLACTES GGVEDMLVGC LWQNDYLLTI
301: SLGGTIYLYS AKDLDKSPLS LSGHMKNITV LTLLNRSEKM LLSSSYDGVI IRWIPGMGYS GKFEGKQFGL IKLLVAGQDE VIAAGFDNKV YRVPLHGDNF
401: GPAETVDVGS QPKDVTLALN NPEFAIVAIE SGVVLLNGSK IVSTINLGFI VTAAAMSPDG SEAIVGGQDG KLHMYSVSGD TVTEQAVLEK HRGAITVIRY
501: SPDFSMFASA DLNREAVVWD RASKEVKLNN MLFNTARINC LAWSPDSTLV ATGSLDTCVI IYEVGKPASS RRTIKGAHIG GVYGLVFIDQ ERVVSSGEDG
601: CVRVWNLISE

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.