CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93168
KRG95386
KRH01660
KRH10268
KRH23061
KRH24799
KRH29804
KRH38098
KRH56507
KRH67068
KRH70465
KRH71847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	KRG93168	AT2G37620.1	21798944
AT3G18060.1	KRG95386	AT2G37620.1	21798944
AT3G18060.1	KRH01660	AT2G37620.1	21798944
AT3G18060.1	KRH10268	AT2G37620.1	21798944
AT3G18060.1	KRH23061	AT2G37620.1	21798944
AT3G18060.1	KRH24799	AT2G37620.1	21798944
AT3G18060.1	KRH29804	AT2G37620.1	21798944
AT3G18060.1	KRH38098	AT2G37620.1	21798944
AT3G18060.1	KRH56507	AT2G37620.1	21798944
AT3G18060.1	KRH67068	AT2G37620.1	21798944
AT3G18060.1	KRH70465	AT2G37620.1	21798944
AT3G18060.1	KRH71847	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	95.9	95.9
VIT_17s0000g02670.t01	Wine grape	cytosol	80.98	81.12
Solyc03g119090.2.1	Tomato	cytosol, extracellular	78.69	78.82
PGSC0003DMT400014412	Potato	cytosol	78.69	78.82
AT3G18060.1	Thale cress	cytosol	75.41	75.53
Bra022278.1-P	Field mustard	cytosol	75.25	75.37
CDY49616	Canola	cytosol	68.69	75.09
CDX92192	Canola	cytosol	73.11	74.83
GSMUA_Achr10P...	Banana	cytosol	74.26	74.38
GSMUA_Achr3P20980_001	Banana	cytosol	70.66	74.18
KRG90988	Soybean	cytosol	71.8	71.8
Zm00001d014053_P001	Maize	cytosol	30.16	69.96
Zm00001d040038_P001	Maize	cytosol, extracellular	69.02	69.02
Os01t0125800-01	Rice	plasma membrane	68.85	68.85
HORVU3Hr1G004510.1	Barley	cytosol	67.54	67.43
TraesCS3B01G034400.1	Wheat	cytosol, golgi	67.38	67.38
TraesCS3A01G047800.1	Wheat	cytosol	67.21	67.21
TraesCS3D01G031900.1	Wheat	cytosol	67.05	67.05
KRH35765	Soybean	golgi	47.38	66.28
Zm00001d008517_P001	Maize	cytosol	69.02	65.99
Zm00001d008768_P001	Maize	cytosol	18.69	65.9
Zm00001d038078_P001	Maize	cytosol	18.69	65.9
HORVU3Hr1G021490.1	Barley	cytosol	4.43	62.79
KXG32003	Sorghum	cytosol	69.18	62.7
Zm00001d047714_P001	Maize	plasma membrane	30.0	61.62
Zm00001d042097_P001	Maize	cytosol	6.39	54.93
Zm00001d029295_P001	Maize	cytosol	8.36	32.08

Protein Annotations

EntrezGene:100805073	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02003367	EnsemblPlantsGene:GLYMA_05G243900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030042	GO:GO:0030836
GO:GO:0030864	GO:GO:0042643	GO:GO:0051015	UniProt:I1K5E5	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH60498	ProteinID:KRH60498	ProteinID:KRH60498.1	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4	InterPro:Quino_amine_DH_bsu	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50969	SUPFAM:SSF50998	UniParc:UPI000233A9BE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:41840387..41845675

Molecular Weight (calculated)

66408.1 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.087

Length

610 amino acids

Sequence
(BLAST)

001: MSHELLETYA CMPTTERGRG ILISGDAKSN SIVYTNGRSV VMMNLQNPLN VSVYGDHAYP ATVARFSPNG EWVASADASG SVRIWGTRND FVLKKEFRVL
101: SARIDDLQWS PDGLRIVACG EGKGKSFVRA FMWDSGTNVG EFDGHSRRVL SCAYKPTRPF RVVTCGEDFL LNFYEGPPFR FKLSHRDHSN FVNCVRYSPD
201: GSKFISVSSD KKGIIFDGNS AEKIGELSSE GGHTGSIYAV SWSPDGKLVL TVSADKSAKV WDITEDNNGK VKKTLTCPGT GGVEDMLVGC LWLNDYLVTV
301: SLGGTISIFL ASDLDKAPTA FSGHMKNVSS LTILRSNPRV LLSSSYDGLI VKWIQGIGYS EKLQRKENSQ IKCLAAVEEE IVTSGFDNKI RRVSLHGDQC
401: GDAEAIDIGS QPKDLSVALL SPELALVSID SGVVMLRGAK IVSTINLGFI VTASAVSPDG NEAIIGGQDG KLHIYSISGD TLVEEAVLEK HRGAISVIRY
501: SPDLSMFASG DVNREAIVWD RASREVKLKN MLYHTARINC LAWSPDSLRI ATGSLDTCVI IYEVYQPASS RITIKGAHLG GVYGLAFTDE YSLVSSGEDA
601: FIRVWRITPR

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.