Factsheet for PGSC0003DMT400014412

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023026
PGSC0003DMT400049429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	PGSC0003DMT400023026	AT2G37620.1	21798944
AT3G18060.1	PGSC0003DMT400049429	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119090.2.1	Tomato	cytosol, extracellular	97.87	97.87
VIT_17s0000g02670.t01	Wine grape	cytosol	84.4	84.4
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	78.98	78.85
KRH60498	Soybean	cytosol	78.82	78.69
AT3G18060.1	Thale cress	cytosol	76.52	76.52
GSMUA_Achr10P...	Banana	cytosol	76.52	76.52
Bra022278.1-P	Field mustard	cytosol	76.03	76.03
CDY49616	Canola	cytosol	69.62	75.99
CDX92192	Canola	cytosol	74.06	75.67
GSMUA_Achr3P20980_001	Banana	cytosol	71.59	75.04
Os01t0125800-01	Rice	plasma membrane	69.95	69.84
Zm00001d040038_P001	Maize	cytosol, extracellular	68.47	68.36
TraesCS3B01G034400.1	Wheat	cytosol, golgi	68.31	68.2
Zm00001d014053_P001	Maize	cytosol	29.39	68.06
HORVU3Hr1G004510.1	Barley	cytosol	68.14	67.92
TraesCS3D01G031900.1	Wheat	cytosol	67.98	67.87
TraesCS3A01G047800.1	Wheat	cytosol	67.82	67.7
Zm00001d008517_P001	Maize	cytosol	68.8	65.67
HORVU3Hr1G021490.1	Barley	cytosol	4.6	65.12
Zm00001d008768_P001	Maize	cytosol	18.39	64.74
Zm00001d038078_P001	Maize	cytosol	18.39	64.74
KXG32003	Sorghum	cytosol	69.29	62.7
Zm00001d047714_P001	Maize	plasma membrane	30.21	61.95
Zm00001d042097_P001	Maize	cytosol	6.9	59.15
Zm00001d029295_P001	Maize	cytosol	9.03	34.59

Protein Annotations

EntrezGene:102580136	Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M1A466	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400005655	PGSC:PGSC0003DMG400005655
EnsemblPlants:PGSC0003DMT400014412	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029599D5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006341564.1	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005655]

Coordinates

chr3:-:58550553..58556804

Molecular Weight (calculated)

66210.8 Da

IEP (calculated)

6.570

GRAVY (calculated)

-0.101

Length

609 amino acids

Sequence
(BLAST)

001: MAELKETYAC IPSTERGRGI LISGDPKSNS ILYCNGRSVI IRYLDRPLQV AVYGEHAYQA TVARYSPNGE WIASADVSGT VRIWGTHNDF VLKKEFRVLS
101: GRIDDLQWSP DGMRIVACGD GKGKSLVRAF MWDSGTNVGE FDGHSRRVLS CAFKPTRPFR IATCGEDFLM NFYEGPPFKF KLSHREHSNF VNCLRFSPDG
201: SKLISVSSDK KGIIYDAKTG DIIGELSSED GHQGSIYAVS WSPDSKQVLT VAADKSAKIW DISDDGKGKV KKTLASPGSG GVEDMLVGCL WQNDHLVTVS
301: LGGTISIFSA SDLEKSPVSF SGHMKNVNSL AVLRSDPKII LSTSYDGLIV KWIQGIGYSG KLDRKVTSQI KCFAVVEGEI VSCAFDNKIW RVSLLGDQCG
401: DANSVDVGTQ PKDLSLALNS PEVTLVSFET GVILLRGTEV LSTINLGFTV TASVISPDGT EAIVGGQDGK LHLYSITGDT LNEEVVLEKH RGAITVIRYS
501: PDVSMFASAD VNREAVVWDR ASREVKLKNM LYHTARINCL DWSPDNTMVA TGSLDTCVII YDVSKPASHR ITIKGAHLGG VYGLAFTDER SIVSSGEDAC
601: VRVWGITPQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.