CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93168
KRG95386
KRH01660
KRH10268
KRH23061
KRH24799
KRH29804
KRH38098
KRH56507
KRH67068
KRH70465
KRH71847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	KRG93168	AT2G37620.1	21798944
AT3G18060.1	KRG95386	AT2G37620.1	21798944
AT3G18060.1	KRH01660	AT2G37620.1	21798944
AT3G18060.1	KRH10268	AT2G37620.1	21798944
AT3G18060.1	KRH23061	AT2G37620.1	21798944
AT3G18060.1	KRH24799	AT2G37620.1	21798944
AT3G18060.1	KRH29804	AT2G37620.1	21798944
AT3G18060.1	KRH38098	AT2G37620.1	21798944
AT3G18060.1	KRH56507	AT2G37620.1	21798944
AT3G18060.1	KRH67068	AT2G37620.1	21798944
AT3G18060.1	KRH70465	AT2G37620.1	21798944
AT3G18060.1	KRH71847	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60498	Soybean	cytosol	95.9	95.9
VIT_17s0000g02670.t01	Wine grape	cytosol	81.97	82.1
Solyc03g119090.2.1	Tomato	cytosol, extracellular	78.85	78.98
PGSC0003DMT400014412	Potato	cytosol	78.85	78.98
Bra022278.1-P	Field mustard	cytosol	75.41	75.53
AT3G18060.1	Thale cress	cytosol	75.41	75.53
CDY49616	Canola	cytosol	69.02	75.45
CDX92192	Canola	cytosol	73.44	75.17
GSMUA_Achr10P...	Banana	cytosol	74.59	74.71
GSMUA_Achr3P20980_001	Banana	cytosol	71.15	74.7
KRG90988	Soybean	cytosol	72.13	72.13
Zm00001d014053_P001	Maize	cytosol	30.33	70.34
Zm00001d040038_P001	Maize	cytosol, extracellular	68.85	68.85
Os01t0125800-01	Rice	plasma membrane	68.52	68.52
TraesCS3A01G047800.1	Wheat	cytosol	67.38	67.38
HORVU3Hr1G004510.1	Barley	cytosol	67.38	67.27
TraesCS3B01G034400.1	Wheat	cytosol, golgi	67.21	67.21
TraesCS3D01G031900.1	Wheat	cytosol	66.89	66.89
KRH35765	Soybean	golgi	47.7	66.74
Zm00001d008768_P001	Maize	cytosol	18.69	65.9
Zm00001d038078_P001	Maize	cytosol	18.69	65.9
Zm00001d008517_P001	Maize	cytosol	68.85	65.83
HORVU3Hr1G021490.1	Barley	cytosol	4.43	62.79
KXG32003	Sorghum	cytosol	69.02	62.56
Zm00001d047714_P001	Maize	plasma membrane	30.16	61.95
Zm00001d042097_P001	Maize	cytosol	6.39	54.93
Zm00001d029295_P001	Maize	cytosol	8.52	32.7

Protein Annotations

EntrezGene:100794702	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02004781	EnsemblPlantsGene:GLYMA_08G051900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030042	GO:GO:0030836
GO:GO:0030864	GO:GO:0042643	GO:GO:0051015	UniProt:I1KQI6	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH41795	ProteinID:KRH41795	ProteinID:KRH41795.1	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002338B4F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

hypothetical protein

Coordinates

chr8:-:4028370..4033322

Molecular Weight (calculated)

66349.9 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.104

Length

610 amino acids

Sequence
(BLAST)

001: MSHELLETYA CMPTTERGRG ILISGDAKSN SVVYTNGRSV VMMNLQNPLH VSVYGDHAYP ATVARFSPNG EWVASADASG TVRIWGTRND FVLKKEFRVL
101: SARIDDLQWS PDGLRIVACG EGKGKSFVRA FMWDSGTNVG EFDGHSRRVL SCAYKPTRPF RVVTCGEDFL VNFYEGPPFR FKLSHRDHSN FVNCVRYSPD
201: GSKFISVSSD KKGVIFDGKS AEKIGELSSE GGHTGSIYAV SWSPDGKQVL TVSADKSAKV WDITEGNNGK VKKTLTCAGS GGVEDMLVGC LWLNDYLVTV
301: SLGGTISIFL ATDLDKAPTT FSGHMKNVSS LTILRSNPRV LLSSSYDGLI VKWIQGIGYS GKLHRKENSQ IKCLAAVEEE IVTSGFDNKI RRVSLHRDQC
401: GDTEAIDIGS QPKDLSVALL SPELALVSID SGVVMLRGTK IVSTINLGFI VTASAVSPDG SEAIIGGQDG KLHIYSVSGD TLVEEVVLEK HRGAISVIRY
501: SPDVSMFASG DVNREAVVWD RASREVKLKN MLYHTARINC LAWSPDSHRI ATGSLDTCVI IYEVDQPASS RITIKGAHLG GVYGLAFTDE YSLVSSGEDA
601: FIRVWRITPP

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.