Factsheet for Solyc03g119090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g010750.1.1
Solyc10g086460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	Solyc09g010750.1.1	AT2G37620.1	21798944
AT3G18060.1	Solyc10g086460.1.1	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014412	Potato	cytosol	97.87	97.87
VIT_17s0000g02670.t01	Wine grape	cytosol	83.25	83.25
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	78.98	78.85
KRH60498	Soybean	cytosol	78.82	78.69
Bra022278.1-P	Field mustard	cytosol	76.03	76.03
GSMUA_Achr10P...	Banana	cytosol	76.03	76.03
AT3G18060.1	Thale cress	cytosol	76.03	76.03
CDY49616	Canola	cytosol	69.62	75.99
CDX92192	Canola	cytosol	73.89	75.5
GSMUA_Achr3P20980_001	Banana	cytosol	70.94	74.35
Os01t0125800-01	Rice	plasma membrane	69.95	69.84
Zm00001d014053_P001	Maize	cytosol	30.05	69.58
Zm00001d040038_P001	Maize	cytosol, extracellular	68.64	68.52
TraesCS3B01G034400.1	Wheat	cytosol, golgi	68.64	68.52
HORVU3Hr1G004510.1	Barley	cytosol	68.47	68.25
TraesCS3D01G031900.1	Wheat	cytosol	68.31	68.2
TraesCS3A01G047800.1	Wheat	cytosol	68.14	68.03
Zm00001d008768_P001	Maize	cytosol	18.88	66.47
Zm00001d038078_P001	Maize	cytosol	18.88	66.47
Zm00001d008517_P001	Maize	cytosol	68.97	65.83
Zm00001d047714_P001	Maize	plasma membrane	30.87	63.3
KXG32003	Sorghum	cytosol	69.46	62.85
HORVU3Hr1G021490.1	Barley	cytosol	4.43	62.79
Zm00001d042097_P001	Maize	cytosol	6.9	59.15
Zm00001d029295_P001	Maize	cytosol	9.03	34.59

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0030042	GO:GO:0030836	GO:GO:0030864	GO:GO:0042643
GO:GO:0051015	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BM58	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc03g119090.2	EnsemblPlants:Solyc03g119090.2.1	UniParc:UPI00027663CF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

Actin-interacting protein 1-2 [Source:Projected from Arabidopsis thaliana (AT3G18060) UniProtKB/Swiss-Prot;Acc:Q9LV35]

Coordinates

chr3:-:67789960..67796646

Molecular Weight (calculated)

66123.7 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.097

Length

609 amino acids

Sequence
(BLAST)

001: MADLKETYAC IPSTERGRGI LISGDTKSNS ILYCNGRSVI IRYLDRPLQV AVYGEHAYQA TVARYSPNGE WIASADVSGT VRIWGTHNDF VLKKEFRVLS
101: GRIDDLQWSP DGMRIVACGD GKGKSLVRAF MWDSGTNVGE FDGHSRRVLS CAFKPTRPFR IATCGEDFLM NFYEGPPFKF KLSHREHSNF VNCLRFSPDG
201: SKLISVSSDK KGIIYDAKTG DIIGELSSEG GHQGSIYAVS WSPDSKQVLT VSADKSAKVW DISDDGKGKV KKTLASPGSG GVEDMLVGCL WQNDHLVTVS
301: LGGTISIFSA SDLEKPPVSF SGHMKNVNSL AVLRSDPKII LSTSYDGLIV KWIQGIGYSG KLDRKVTSQI KCFAVVEGEL VSCAFDNKIW RVSLLGDQCG
401: DANSIDVGTQ PKDLSLALNS PEVTLVSFET GVILLRGTKV LSTINLGFTV TASVISPDGT EAIVGGQDGK LHLYSIAGDS LNEEVVLEKH RGAITIIRYS
501: PDVSMFASAD VNREAVVWDR ASREVKLNNM LYHTARINCL DWSPDNTMVA TGSLDTCVII YDVSKPASHR ITIKGAHLGG VYGLAFTDER SIVSSGEDAC
601: VRVWGITPQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.