Factsheet for VIT_17s0000g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04570.t01
VIT_08s0007g06520.t01
VIT_13s0019g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	VIT_06s0004g04570.t01	AT2G37620.1	21798944
AT3G18060.1	VIT_08s0007g06520.t01	AT2G37620.1	21798944
AT3G18060.1	VIT_13s0019g01240.t01	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014412	Potato	cytosol	84.4	84.4
Solyc03g119090.2.1	Tomato	cytosol, extracellular	83.25	83.25
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	82.1	81.97
KRH60498	Soybean	cytosol	81.12	80.98
Bra022278.1-P	Field mustard	cytosol	78.16	78.16
CDY49616	Canola	cytosol	71.59	78.14
CDX92192	Canola	cytosol	76.19	77.85
GSMUA_Achr10P...	Banana	cytosol	77.83	77.83
AT3G18060.1	Thale cress	cytosol	77.83	77.83
GSMUA_Achr3P20980_001	Banana	cytosol	72.74	76.25
Zm00001d014053_P001	Maize	cytosol	31.86	73.76
Os01t0125800-01	Rice	plasma membrane	72.25	72.13
Zm00001d040038_P001	Maize	cytosol, extracellular	71.92	71.8
TraesCS3B01G034400.1	Wheat	cytosol, golgi	70.94	70.82
HORVU3Hr1G004510.1	Barley	cytosol	70.94	70.7
TraesCS3A01G047800.1	Wheat	cytosol	70.61	70.49
TraesCS3D01G031900.1	Wheat	cytosol	70.61	70.49
Zm00001d008517_P001	Maize	cytosol	71.92	68.65
Zm00001d008768_P001	Maize	cytosol	19.38	68.21
Zm00001d038078_P001	Maize	cytosol	19.38	68.21
Zm00001d047714_P001	Maize	plasma membrane	32.18	65.99
KXG32003	Sorghum	cytosol	71.92	65.08
Zm00001d042097_P001	Maize	cytosol	7.39	63.38
HORVU3Hr1G021490.1	Barley	cytosol	4.43	62.79
Zm00001d029295_P001	Maize	cytosol	9.03	34.59

Protein Annotations

EntrezGene:100266198	wikigene:100266198	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CBI15544	ProteinID:CBI15544.3
UniProt:D7SJ83	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0030042	GO:GO:0030836	GO:GO:0030864	GO:GO:0042643
GO:GO:0051015	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100266198	wikigene:LOC100266198
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015C9733	ArrayExpress:VIT_17s0000g02670	EnsemblPlantsGene:VIT_17s0000g02670	EnsemblPlants:VIT_17s0000g02670.t01
unigene:Vvi.23806	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002281466	RefSeq:XP_002281466.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:2475568..2490135

Molecular Weight (calculated)

66062.3 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.178

Length

609 amino acids

Sequence
(BLAST)

001: MPELSETYAC VPSTERGRGI LISGDPKSNA ILYTNGRSVI IRYLHKPLEV SIYGEHAYQA TVARFSPNGE WIASADVSGT VRIWGTHNDH VLKKEFRVLS
101: GRIDDLQWSA DGMRIVVSGD GKGKSFVRAF MWDSGSNVGE FDGHSKRVLS CAFKPTRPFR IVTCGEDFLV NFYEGPPFKF KQSHRHHSNF VNCIRYSPDG
201: SKFISVSSDK KGVIYDGKTG EKIGELSSED GHKGSIYAVS WSPDSKQVLT VSADKSAKVW EISEDGNGKV KKTLTCPGSG GVEDMLVGCL WQNDHLVTIS
301: LGGTVSIFSA SDLDKGPLSF SGHMKNVNSL AVLKSNPKVM LSTSYDGLII KWIQGIGYSG RLDRKENSQI KCFAAVEEEI VSSGFDNKIW RVSLQGDQCG
401: DADCVDIGSQ PKDLSLSLLS PELALVSTDS GVVILRGTNV VSTINLGFPV AASVISPDGS EAIIGGQDGK LHIYSVTGDT LKEEAVLEKH RGAITVIRYS
501: PDVSMFASGD ANREAVVWDR ASREVRVKNM LYHTARINCL AWSPDNSMVA TGSLDTCVII YEIDKPASSR VTIKGAHLGG VYGLAFTDDT SVVSSGEDAC
601: VRVWKLTPQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.