Factsheet for Bra037560.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	Bra016034.1-P	AT1G72770.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019635_P001	Maize	cytosol	35.41	90.58
Zm00001d016605_P001	Maize	cytosol	38.24	85.44
AT3G18780.3	Thale cress	cytosol	90.37	84.62
CDX92272	Canola	cytosol	90.37	84.62
CDX95498	Canola	cytosol	90.37	84.62
AT1G49240.1	Thale cress	cytosol	90.08	84.35
CDX82326	Canola	cytosol	90.08	84.35
Bra003156.1-P	Field mustard	cytosol	49.01	83.98
Zm00001d016508_P001	Maize	cytosol	32.29	82.61
Bra005178.1-P	Field mustard	cytosol	81.87	81.64
Bra022356.1-P	Field mustard	cytosol	74.22	81.11
TraesCS5D01G132200.1	Wheat	golgi	83.85	79.78
Zm00001d019396_P001	Maize	cytosol	37.68	79.17
Bra028615.1-P	Field mustard	cytosol	84.42	79.05
GSMUA_Achr7P10410_001	Banana	cytosol	84.14	78.78
KRH64098	Soybean	cytosol	83.85	78.51
PGSC0003DMT400010174	Potato	cytosol	83.85	78.51
PGSC0003DMT400047481	Potato	cytosol	83.85	78.51
Solyc03g078400.2.1	Tomato	nucleus, plastid	83.85	78.51
Solyc11g005330.1.1	Tomato	nucleus	83.85	78.51
GSMUA_Achr9P03170_001	Banana	cytosol	83.57	78.46
Bra006033.1-P	Field mustard	cytosol	83.57	78.25
EES08028	Sorghum	cytosol	83.57	78.25
GSMUA_Achr2P16160_001	Banana	cytosol	83.57	78.25
HORVU5Hr1G117900.1	Barley	cytosol	83.57	78.25
KRH43389	Soybean	cytosol	83.57	78.25
KRH59535	Soybean	cytosol	83.57	78.25
KXG23031	Sorghum	cytosol	83.57	78.25
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	83.57	78.25
TraesCS5B01G124100.1	Wheat	cytosol	83.57	78.25
TraesCS5B01G516100.1	Wheat	cytosol	83.57	78.25
TraesCS5D01G516200.1	Wheat	cytosol	83.57	78.25
Bra034778.1-P	Field mustard	cytosol	83.29	77.98
GSMUA_Achr10P...	Banana	cytosol	83.29	77.98
GSMUA_Achr6P25350_001	Banana	cytosol	83.29	77.98
Os05t0106600-01	Rice	nucleus	83.29	77.98
Zm00001d053177_P004	Maize	cytosol	83.29	77.98
TraesCS4A01G356100.2	Wheat	cytosol	83.57	77.84
EER90564	Sorghum	cytosol	83.0	77.72
GSMUA_Achr11P...	Banana	cytosol	83.0	77.72
GSMUA_Achr8P02660_001	Banana	cytosol	83.0	77.72
Os01t0964133-01	Rice	plasma membrane	83.0	77.72
TraesCS1B01G024500.1	Wheat	golgi, nucleus	83.0	77.72
TraesCS1D01G020000.1	Wheat	cytosol	83.0	77.72
Bra018210.1-P	Field mustard	cytosol	82.72	77.45
Bra033819.1-P	Field mustard	cytosol	82.72	77.45
GSMUA_Achr3P02960_001	Banana	cytosol	82.72	77.45
GSMUA_Achr8P16150_001	Banana	cytosol	82.72	77.45
KXG21029	Sorghum	cytosol	82.72	77.45
Zm00001d011086_P005	Maize	cytosol	82.72	77.45
Zm00001d035720_P002	Maize	cytosol	82.72	77.45
Zm00001d012277_P001	Maize	cytosol	82.44	77.39
Bra000010.1-P	Field mustard	cytosol	82.44	77.19
Bra019486.1-P	Field mustard	cytosol	82.44	77.19
Os03t0836000-01	Rice	plasma membrane, plastid	82.44	77.19
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	72.52	77.11
Bra009081.1-P	Field mustard	cytosol	77.05	77.05
GSMUA_Achr5P29190_001	Banana	cytosol	75.92	77.01
Bra007025.1-P	Field mustard	cytosol	82.15	76.92
Bra014865.1-P	Field mustard	cytosol	82.15	76.92
EES01810	Sorghum	cytosol	81.87	76.86
GSMUA_Achr9P08850_001	Banana	cytosol	75.92	76.79
Bra017166.1-P	Field mustard	cytosol	81.59	76.39
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	81.3	76.33
Bra006719.1-P	Field mustard	cytosol	71.67	76.2
Os05t0438800-01	Rice	plasma membrane, plastid	81.02	76.06
GSMUA_Achr11P...	Banana	cytosol	75.07	75.93
Zm00001d035722_P007	Maize	plasma membrane	82.72	75.84
HORVU1Hr1G074350.1	Barley	cytosol	80.74	75.8
TraesCS1A01G274400.1	Wheat	golgi	80.74	75.8
TraesCS1B01G283900.1	Wheat	cytosol	80.74	75.8
TraesCS1D01G274400.1	Wheat	cytosol	80.74	75.8
Bra020319.1-P	Field mustard	cytosol	72.8	75.59
EES19603	Sorghum	cytosol	80.45	75.53
Zm00001d010159_P002	Maize	extracellular, plasma membrane	79.89	75.0
Zm00001d034761_P002	Maize	cytosol	83.0	74.74
TraesCS5A01G124300.2	Wheat	golgi	83.57	72.13
HORVU1Hr1G002840.6	Barley	plasma membrane	83.0	71.99
TraesCS1A01G020500.2	Wheat	cytosol	83.0	71.99
GSMUA_Achr10P...	Banana	cytosol	54.96	70.55
GSMUA_Achr6P34320_001	Banana	cytosol	48.73	70.49
GSMUA_Achr2P08030_001	Banana	cytosol	69.41	70.0
Zm00001d007792_P001	Maize	cytosol	52.12	69.7
Zm00001d003298_P001	Maize	cytosol	51.84	69.58
KXG21030	Sorghum	cytosol	76.2	69.15
Os01t0866100-01	Rice	plasma membrane	39.09	67.98
Zm00001d004087_P001	Maize	cytosol	40.79	66.67
VIT_04s0044g00580.t01	Wine grape	extracellular	83.85	64.35
Zm00001d011087_P001	Maize	plastid	82.72	64.32
Zm00001d008746_P001	Maize	cytosol	49.86	64.0
Bra016895.1-P	Field mustard	cytosol	53.82	62.71
HORVU5Hr1G039850.3	Barley	mitochondrion	80.17	60.86
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	82.44	49.32
Bra002571.1-P	Field mustard	nucleus	82.72	48.26
Bra039097.1-P	Field mustard	cytosol	41.08	37.28
Bra025243.1-P	Field mustard	cytosol	38.53	37.16
Zm00001d034421_P004	Maize	plastid	44.76	33.76
Bra003429.1-P	Field mustard	cytosol	32.29	31.67
Bra016738.1-P	Field mustard	cytosol	33.14	27.4
Bra019815.1-P	Field mustard	cytosol	32.58	26.93
Bra007566.1-P	Field mustard	cytosol	22.66	24.39
Bra030818.1-P	Field mustard	cytosol	11.33	18.02
Bra019816.1-P	Field mustard	nucleus	9.92	9.28

Protein Annotations

Gene3D:2.30.36.70	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:ACR78201	ProteinID:ACR78201.1
InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	EnsemblPlantsGene:Bra037560	EnsemblPlants:Bra037560.1	EnsemblPlants:Bra037560.1-P
ncoils:Coil	EMBL:FJ969844	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
UniProt:M4F8Z7	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS01132	PANTHER:PTHR11937
PANTHER:PTHR11937:SF276	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002544E73	SEG:seg	:

Description

AT3G18780 (E=2e-178) ACT2, DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton

Coordinates

chrA01:-:21948428..21949655

Molecular Weight (calculated)

35567.7 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.156

Length

353 amino acids

Sequence
(BLAST)

001: MAEADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAXXXXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXIADR MSKEITALAP SSMKIKVVAP PERKYSVWIG GSILASLSTF QQV

Best Arabidopsis Sequence Match ( AT1G49240.1 )
(BLAST)

001: MADADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYDEAGPG IVHRKCF

Arabidopsis Description

ACT8Actin-8 [Source:UniProtKB/Swiss-Prot;Acc:Q96293]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.