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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019815.1-P Field mustard cytosol 17.77 15.69
Bra016738.1-P Field mustard cytosol 17.24 15.22
Bra006719.1-P Field mustard cytosol 11.14 12.65
Bra022356.1-P Field mustard cytosol 10.08 11.76
Bra006033.1-P Field mustard cytosol 11.67 11.67
Bra019486.1-P Field mustard cytosol 11.67 11.67
Bra018210.1-P Field mustard cytosol 11.67 11.67
Bra020319.1-P Field mustard cytosol 10.34 11.47
Bra033819.1-P Field mustard cytosol 11.41 11.41
Bra028615.1-P Field mustard cytosol 11.41 11.41
Bra005178.1-P Field mustard cytosol 10.61 11.3
Bra000010.1-P Field mustard cytosol 11.14 11.14
Bra034778.1-P Field mustard cytosol 11.14 11.14
Bra014865.1-P Field mustard cytosol 10.88 10.88
Bra017166.1-P Field mustard cytosol 10.88 10.88
Bra007025.1-P Field mustard cytosol 10.88 10.88
Bra009081.1-P Field mustard cytosol 10.08 10.76
Bra025243.1-P Field mustard cytosol 9.81 10.11
Bra037560.1-P Field mustard cytoskeleton, cytosol 9.28 9.92
Bra039097.1-P Field mustard cytosol 10.08 9.77
Bra003156.1-P Field mustard cytosol 4.77 8.74
Bra016895.1-P Field mustard cytosol 6.37 7.92
Bra003429.1-P Field mustard cytosol 7.43 7.78
Bra002571.1-P Field mustard nucleus 11.67 7.27
Bra030818.1-P Field mustard cytosol 3.71 6.31
Bra007566.1-P Field mustard cytosol 5.31 6.1
Protein Annotations
EnsemblPlants:Bra019816.1EnsemblPlants:Bra019816.1-PEnsemblPlantsGene:Bra019816Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR44751PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360
SUPFAM:SSF54928UniParc:UPI000253EBF4UniProt:M4DTH3MapMan:16.2.1.4.2::
Description
AT1G13190 (E=2e-079) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA06:-:4264892..4266025
Molecular Weight (calculated)
40358.5 Da
IEP (calculated)
8.435
GRAVY (calculated)
-1.064
Length
377 amino acids
Sequence
(BLAST)
001: MLFVGELHWW TTDAEIESVL SQYGRVKEIK FFDERVSGKS KGYCQVEFYD SAAAAACKEG MNGFVFNGKA CVVAFASPET LKQMGANFTG RNQGQNQMQN
101: RRPLNEGMGR GNNNNNNNNN MNTQNGDGGR NFGRGGGFAR GGQGMGNRGG HWGGAARGRG MNNMANGAGA GPYGGPGLAG PAFGGMMHPQ GMMGAGGFDP
201: TFMGRGGGYG GFPGLAYPGM PQPYPGVNPM GMVGIAPHVN PAFFGGAGMG TMGNAGMNGV HAGGMWNEAS GGGGGGEEGG SEYGGYEDEN QEKEEKPSRE
301: KERSTTERDW SESSGGDRRH KSHREEKDSH REYKHRDSEE YDRGQSSSKS RSRSRMSEDD HRSRSRDADY GKRRRGD
Best Arabidopsis Sequence Match ( AT1G13190.1 )
(BLAST)
001: MTEENDYGGN QKILHQGSGT IPALADEELM GDDDEYDDLY SDVNVGESFF QAHNQPQPPA QVNTSNASLQ AQNSHVAAEP RMGIVSGGTV EGKYRNDGGH
101: NGISGPDTRS DVYPQASSFG AKGLNIDIQS NKIAQQGSTT VVLNNHGFSG NAVNVPEMPV HNSYGAPPQG AQQIPVSQMS VNPNVMMNKS PTQSFVVDNG
201: NTMLFVGELH WWTTDAEIES VLSQYGRVKE IKFFDERVSG KSKGYCQVEF YDSAAAAACK EGMNGFIFNG KACVVAFASP ETLKQMGANF TGRNQGQNQI
301: QNRRPLNEGM GRGNNNNNNM NTQNGDGGRN YGRGGFARGG QGMGNRGGAW GGAMRGRGVN NMASGSGAGP YGPGLAGPAF GGMMHPQGMM GAGGFDPTFM
401: GRGAGYGGYS GIAYPGMPHS YPGVNAMGMV GIAPHVNPAF FGTGMGTMGS SGMNGVHAAA MWSEANGGGG EEGGSEYGGY EDETQEKEEK PSRDKERATT
501: ERDWSENSGD RRHKSHREEK DSHREYKQQR DRDSDEFDRG QSSLKSRSRS RMSEDDHRSR SRDADYGKRR RGD
Arabidopsis Description
F3F19.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAF2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.