Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra019815.1-P | Field mustard | cytosol | 17.77 | 15.69 |
Bra016738.1-P | Field mustard | cytosol | 17.24 | 15.22 |
Bra006719.1-P | Field mustard | cytosol | 11.14 | 12.65 |
Bra022356.1-P | Field mustard | cytosol | 10.08 | 11.76 |
Bra006033.1-P | Field mustard | cytosol | 11.67 | 11.67 |
Bra019486.1-P | Field mustard | cytosol | 11.67 | 11.67 |
Bra018210.1-P | Field mustard | cytosol | 11.67 | 11.67 |
Bra020319.1-P | Field mustard | cytosol | 10.34 | 11.47 |
Bra033819.1-P | Field mustard | cytosol | 11.41 | 11.41 |
Bra028615.1-P | Field mustard | cytosol | 11.41 | 11.41 |
Bra005178.1-P | Field mustard | cytosol | 10.61 | 11.3 |
Bra000010.1-P | Field mustard | cytosol | 11.14 | 11.14 |
Bra034778.1-P | Field mustard | cytosol | 11.14 | 11.14 |
Bra014865.1-P | Field mustard | cytosol | 10.88 | 10.88 |
Bra017166.1-P | Field mustard | cytosol | 10.88 | 10.88 |
Bra007025.1-P | Field mustard | cytosol | 10.88 | 10.88 |
Bra009081.1-P | Field mustard | cytosol | 10.08 | 10.76 |
Bra025243.1-P | Field mustard | cytosol | 9.81 | 10.11 |
Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 9.28 | 9.92 |
Bra039097.1-P | Field mustard | cytosol | 10.08 | 9.77 |
Bra003156.1-P | Field mustard | cytosol | 4.77 | 8.74 |
Bra016895.1-P | Field mustard | cytosol | 6.37 | 7.92 |
Bra003429.1-P | Field mustard | cytosol | 7.43 | 7.78 |
Bra002571.1-P | Field mustard | nucleus | 11.67 | 7.27 |
Bra030818.1-P | Field mustard | cytosol | 3.71 | 6.31 |
Bra007566.1-P | Field mustard | cytosol | 5.31 | 6.1 |
Protein Annotations
EnsemblPlants:Bra019816.1 | EnsemblPlants:Bra019816.1-P | EnsemblPlantsGene:Bra019816 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
InterPro:RRM_dom | PANTHER:PTHR44751 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
SUPFAM:SSF54928 | UniParc:UPI000253EBF4 | UniProt:M4DTH3 | MapMan:16.2.1.4.2 | : | : |
Description
AT1G13190 (E=2e-079) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA06:-:4264892..4266025
Molecular Weight (calculated)
40358.5 Da
IEP (calculated)
8.435
GRAVY (calculated)
-1.064
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFVGELHWW TTDAEIESVL SQYGRVKEIK FFDERVSGKS KGYCQVEFYD SAAAAACKEG MNGFVFNGKA CVVAFASPET LKQMGANFTG RNQGQNQMQN
101: RRPLNEGMGR GNNNNNNNNN MNTQNGDGGR NFGRGGGFAR GGQGMGNRGG HWGGAARGRG MNNMANGAGA GPYGGPGLAG PAFGGMMHPQ GMMGAGGFDP
201: TFMGRGGGYG GFPGLAYPGM PQPYPGVNPM GMVGIAPHVN PAFFGGAGMG TMGNAGMNGV HAGGMWNEAS GGGGGGEEGG SEYGGYEDEN QEKEEKPSRE
301: KERSTTERDW SESSGGDRRH KSHREEKDSH REYKHRDSEE YDRGQSSSKS RSRSRMSEDD HRSRSRDADY GKRRRGD
101: RRPLNEGMGR GNNNNNNNNN MNTQNGDGGR NFGRGGGFAR GGQGMGNRGG HWGGAARGRG MNNMANGAGA GPYGGPGLAG PAFGGMMHPQ GMMGAGGFDP
201: TFMGRGGGYG GFPGLAYPGM PQPYPGVNPM GMVGIAPHVN PAFFGGAGMG TMGNAGMNGV HAGGMWNEAS GGGGGGEEGG SEYGGYEDEN QEKEEKPSRE
301: KERSTTERDW SESSGGDRRH KSHREEKDSH REYKHRDSEE YDRGQSSSKS RSRSRMSEDD HRSRSRDADY GKRRRGD
001: MTEENDYGGN QKILHQGSGT IPALADEELM GDDDEYDDLY SDVNVGESFF QAHNQPQPPA QVNTSNASLQ AQNSHVAAEP RMGIVSGGTV EGKYRNDGGH
101: NGISGPDTRS DVYPQASSFG AKGLNIDIQS NKIAQQGSTT VVLNNHGFSG NAVNVPEMPV HNSYGAPPQG AQQIPVSQMS VNPNVMMNKS PTQSFVVDNG
201: NTMLFVGELH WWTTDAEIES VLSQYGRVKE IKFFDERVSG KSKGYCQVEF YDSAAAAACK EGMNGFIFNG KACVVAFASP ETLKQMGANF TGRNQGQNQI
301: QNRRPLNEGM GRGNNNNNNM NTQNGDGGRN YGRGGFARGG QGMGNRGGAW GGAMRGRGVN NMASGSGAGP YGPGLAGPAF GGMMHPQGMM GAGGFDPTFM
401: GRGAGYGGYS GIAYPGMPHS YPGVNAMGMV GIAPHVNPAF FGTGMGTMGS SGMNGVHAAA MWSEANGGGG EEGGSEYGGY EDETQEKEEK PSRDKERATT
501: ERDWSENSGD RRHKSHREEK DSHREYKQQR DRDSDEFDRG QSSLKSRSRS RMSEDDHRSR SRDADYGKRR RGD
101: NGISGPDTRS DVYPQASSFG AKGLNIDIQS NKIAQQGSTT VVLNNHGFSG NAVNVPEMPV HNSYGAPPQG AQQIPVSQMS VNPNVMMNKS PTQSFVVDNG
201: NTMLFVGELH WWTTDAEIES VLSQYGRVKE IKFFDERVSG KSKGYCQVEF YDSAAAAACK EGMNGFIFNG KACVVAFASP ETLKQMGANF TGRNQGQNQI
301: QNRRPLNEGM GRGNNNNNNM NTQNGDGGRN YGRGGFARGG QGMGNRGGAW GGAMRGRGVN NMASGSGAGP YGPGLAGPAF GGMMHPQGMM GAGGFDPTFM
401: GRGAGYGGYS GIAYPGMPHS YPGVNAMGMV GIAPHVNPAF FGTGMGTMGS SGMNGVHAAA MWSEANGGGG EEGGSEYGGY EDETQEKEEK PSRDKERATT
501: ERDWSENSGD RRHKSHREEK DSHREYKQQR DRDSDEFDRG QSSLKSRSRS RMSEDDHRSR SRDADYGKRR RGD
Arabidopsis Description
F3F19.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.