CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90564
EER90794
EES00964
EES01810
EES08028
EES19603
KXG21029
KXG21030
KXG22422
KXG22681
KXG23031
KXG32003
KXG39048
OQU87413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	EES00964	AT1G72770.1	19033529
AT1G49240.1	KXG22422	AT1G72770.1	19033529
AT1G49240.1	KXG22681	AT1G72770.1	19033529
AT1G49240.1	OQU87413	AT1G72770.1	19033529
AT5G09810.1	EER90794	AT2G31200.1	21798944
AT5G09810.1	KXG39048	AT2G31200.1	21798944
AT5G09810.1	KXG32003	AT3G18060.1	21798944
AT5G09810.1	EER90564	AT5G09810.1	21798944
AT5G09810.1	EES01810	AT5G09810.1	21798944
AT5G09810.1	EES08028	AT5G09810.1	21798944
AT5G09810.1	EES19603	AT5G09810.1	21798944
AT5G09810.1	KXG21029	AT5G09810.1	21798944
AT5G09810.1	KXG21030	AT5G09810.1	21798944
AT5G09810.1	KXG23031	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053177_P004	Maize	cytosol	99.47	99.47
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	99.2	99.2
EER93954	Sorghum	cytosol	98.41	98.41
KXG23031	Sorghum	cytosol	98.41	98.41
AT5G09810.1	Thale cress	cytosol	98.14	98.14
CDY21607	Canola	cytosol	97.88	97.88
CDX69885	Canola	cytosol	97.88	97.88
CDX85794	Canola	cytosol	91.51	97.73
CDY40061	Canola	cytosol	91.51	97.73
CDY31972	Canola	cytosol	91.51	97.73
CDY30296	Canola	cytosol	91.51	97.73
KXG21029	Sorghum	cytosol	97.61	97.61
Bra028615.1-P	Field mustard	cytosol	97.61	97.61
VIT_12s0178g00200.t01	Wine grape	cytosol	97.61	97.61
EER90564	Sorghum	cytosol	97.61	97.61
Bra009081.1-P	Field mustard	cytosol	91.25	97.45
CDX81140	Canola	cytosol	97.35	97.35
CDY56544	Canola	cytosol	97.35	97.35
KRH43389	Soybean	cytosol	97.08	97.08
KRH64098	Soybean	cytosol	97.08	97.08
KRH59535	Soybean	cytosol	97.08	97.08
PGSC0003DMT400047481	Potato	cytosol	97.08	97.08
Solyc03g078400.2.1	Tomato	nucleus, plastid	97.08	97.08
Bra006033.1-P	Field mustard	cytosol	97.08	97.08
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	85.41	96.99
KXG37705	Sorghum	cytosol	96.82	96.82
Solyc11g005330.1.1	Tomato	nucleus	96.55	96.55
PGSC0003DMT400010174	Potato	cytosol	96.55	96.55
Solyc01g104770.2.1	Tomato	nucleus	96.02	96.02
PGSC0003DMT400076499	Potato	cytosol	49.07	95.85
EES01810	Sorghum	cytosol	94.43	94.68
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.43	94.43
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.43	94.43
EES19603	Sorghum	cytosol	92.57	92.82
Solyc04g071260.2.1	Tomato	plastid	92.31	92.31
AT1G49240.1	Thale cress	cytosol	92.04	92.04
CDX82326	Canola	cytosol	92.04	92.04
CDX99315	Canola	cytosol	78.78	91.95
Bra022356.1-P	Field mustard	cytosol	78.78	91.95
CDY61982	Canola	cytosol	91.78	91.78
AT3G18780.3	Thale cress	cytosol	91.78	91.78
CDX92272	Canola	cytosol	91.78	91.78
CDY18545	Canola	cytosol	91.78	91.78
CDX95498	Canola	cytosol	91.78	91.78
CDX92271	Canola	cytosol	76.39	90.85
PGSC0003DMT400076501	Potato	cytosol	46.42	87.5
KXG21030	Sorghum	cytosol	87.8	85.09
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	78.25	83.57
VIT_04s0044g00580.t01	Wine grape	extracellular	97.08	79.57
PGSC0003DMT400087294	Potato	mitochondrion	56.5	77.74
PGSC0003DMT400022210	Potato	cytosol	68.7	70.38
PGSC0003DMT400022205	Potato	cytosol	67.11	69.13
PGSC0003DMT400074882	Potato	cytosol	67.37	68.65
PGSC0003DMT400074887	Potato	cytosol	64.46	65.68
PGSC0003DMT400088088	Potato	cytosol	32.89	63.92
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	98.14	62.71
EER99952	Sorghum	cytosol	45.62	44.22
EER93001	Sorghum	cytosol	42.44	36.12
EER91551	Sorghum	cytosol	34.22	35.83
KXG30555	Sorghum	cytosol	38.46	33.49
KXG24330	Sorghum	cytosol	37.67	32.64
OQU79631	Sorghum	cytosol	33.69	29.4

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:8083089	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	UniProt:C5Y567	EnsemblPlants:EES08028	ProteinID:EES08028	ProteinID:EES08028.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	SMART:SM00268	EnsemblPlantsGene:SORBI_3005G047100
SUPFAM:SSF53067	unigene:Sbi.3802	UniParc:UPI0001A862B4	RefSeq:XP_002449040.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:4469547..4472327

Molecular Weight (calculated)

41669.0 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.168

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY VALDYEQELE SAKSSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSFIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYDESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF

Arabidopsis Description

ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.