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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88529
EER92405
EES04686
EES04864
EES06532
EES17886
EES19683
KXG33203
KXG34371
KXG37877
OQU87775
OQU92088

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G72770.1 EES04864 AT1G01360.1 19407142
AT1G72770.1 EES17886 AT1G01360.1 19407142
AT1G72770.1 EES04864 AT1G01360.1 19407143
AT1G72770.1 EES17886 AT1G01360.1 19407143
AT1G72770.1 EER88529 AT1G73000.1 19407142
AT1G72770.1 EES06532 AT1G73000.1 19407142
AT1G72770.1 EER88529 AT2G26040.1 19407142
AT1G72770.1 EES06532 AT2G26040.1 19407142
AT1G72770.1 KXG34371 AT2G30880.1 21798944
AT1G72770.1 KXG37877 AT2G30880.1 21798944
AT1G72770.1 EES04686 AT2G33610.1 19033529
AT1G72770.1 EER92405 AT2G38310.1 19407142
AT1G72770.1 EES19683 AT2G38310.1 19407142
AT1G72770.1 OQU87775 AT2G38310.1 19407142
AT1G72770.1 EER92405 AT2G38310.1 19624469
AT1G72770.1 EES19683 AT2G38310.1 19624469
AT1G72770.1 OQU87775 AT2G38310.1 19624469
AT1G72770.1 EER92405 AT2G40330.1 19407142
AT1G72770.1 EES19683 AT2G40330.1 19407142
AT1G72770.1 OQU87775 AT2G40330.1 19407142
AT1G72770.1 EER92405 AT2G40330.1 19624469
AT1G72770.1 EES19683 AT2G40330.1 19624469
AT1G72770.1 OQU87775 AT2G40330.1 19624469
AT1G72770.1 EER92405 AT2G40330.1 21847091
AT1G72770.1 EES19683 AT2G40330.1 21847091
AT1G72770.1 OQU87775 AT2G40330.1 21847091
AT1G72770.1 EES04864 AT4G01026.1 19407142
AT1G72770.1 EES17886 AT4G01026.1 19407142
AT1G72770.1 OQU92088 AT4G17870.1 19407142
AT1G72770.1 OQU92088 AT4G17870.1 19624469
AT1G72770.1 OQU92088 AT4G17870.1 21847091
AT1G72770.1 EES04864 AT4G27920.1 19407142
AT1G72770.1 EES17886 AT4G27920.1 19407142
AT1G72770.1 EER92405 AT5G05440.1 19407142
AT1G72770.1 EES19683 AT5G05440.1 19407142
AT1G72770.1 OQU87775 AT5G05440.1 19407142
AT1G72770.1 EER92405 AT5G05440.1 19624469
AT1G72770.1 EES19683 AT5G05440.1 19624469
AT1G72770.1 OQU87775 AT5G05440.1 19624469
AT1G72770.1 EER92405 AT5G05440.1 21847091
AT1G72770.1 EES19683 AT5G05440.1 21847091
AT1G72770.1 OQU87775 AT5G05440.1 21847091
AT1G72770.1 OQU92088 AT5G46790.1 19407142
AT1G72770.1 KXG33203 AT5G66400.1 19033529
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU3Hr1G067380.4 Barley cytosol 60.05 68.25
TraesCS3D01G249000.1 Wheat cytosol 65.01 65.7
TraesCS3A01G249000.1 Wheat cytosol 63.71 63.21
KXG22422 Sorghum cytosol, nucleus, plastid 60.84 61.32
PGSC0003DMT400021210 Potato cytosol, nucleus, peroxisome 14.36 61.11
TraesCS3B01G277900.1 Wheat cytosol 64.49 59.23
Solyc08g062640.2.1 Tomato cytosol 19.58 55.97
KXG35986 Sorghum cytosol, peroxisome, plastid 24.8 46.8
KXG22681 Sorghum cytosol 51.44 46.03
CDX83901 Canola cytosol 41.78 45.71
CDX96761 Canola cytosol 41.51 45.43
Bra016595.1-P Field mustard cytosol 48.3 45.12
EES00964 Sorghum peroxisome, plasma membrane, vacuole 51.96 41.29
Solyc12g096020.1.1 Tomato cytosol, nucleus, plastid 53.79 40.55
PGSC0003DMT400075333 Potato cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 54.31 38.81
CDX72943 Canola cytosol, peroxisome, plastid 48.04 38.74
EER96576 Sorghum cytosol 36.03 38.66
Bra016034.1-P Field mustard cytosol, peroxisome, plastid 48.04 38.02
CDX96432 Canola cytosol, peroxisome, plastid 48.04 38.02
VIT_09s0002g01850.t01 Wine grape cytosol, peroxisome, plastid 53.0 37.04
CDY26234 Canola cytosol 47.78 36.9
AT1G72770.1 Thale cress cytosol 49.09 36.79
OQU78453 Sorghum nucleus 37.86 36.71
Bra025964.1-P Field mustard cytosol 48.56 36.61
CDY48313 Canola cytosol 47.78 36.53
AT1G17550.1 Thale cress cytosol 48.3 36.2
VIT_04s0008g01420.t01 Wine grape cytosol 51.96 36.12
KRH61549 Soybean cytosol 51.17 36.03
KRH52222 Soybean cytosol 50.91 35.85
PGSC0003DMT400006608 Potato plastid 50.91 35.78
KRH15739 Soybean cytosol 51.17 35.19
KRH05300 Soybean cytosol 51.17 35.13
EER92493 Sorghum nucleus 35.77 34.16
EES01744 Sorghum plastid 35.77 33.25
KXG33023 Sorghum nucleus 38.12 30.8
Solyc08g062650.2.1 Tomato extracellular 37.6 30.7
KXG22152 Sorghum nucleus 34.99 28.88
EES11811 Sorghum plastid 36.29 28.43
OQU90183 Sorghum mitochondrion 15.93 21.48
OQU86100 Sorghum nucleus 16.19 15.54
KXG28797 Sorghum golgi, plasma membrane, vacuole 21.93 7.87
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:11.1.2.1.1.2MapMan:18.4.24.2.1Gene3D:3.60.40.10UniProt:A0A1W0VZ61
GO:GO:0003674GO:GO:0003824GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464
GO:GO:0006470GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0043169GO:GO:0046872InterPro:IPR001932InterPro:IPR036457EnsemblPlants:OQU87413ProteinID:OQU87413
ProteinID:OQU87413.1PFAM:PF00481InterPro:PP2CInterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032PFscan:PS51746PANTHER:PTHR13832PANTHER:PTHR13832:SF517SMART:SM00332EnsemblPlantsGene:SORBI_3003G275501
SUPFAM:SSF81606UniParc:UPI0009DC8333SEG:seg:::
Description
hypothetical protein
Coordinates
chr3:+:61181064..61186206
Molecular Weight (calculated)
40794.5 Da
IEP (calculated)
7.216
GRAVY (calculated)
-0.190
Length
383 amino acids
Sequence
(BLAST)
001: MATARAGDDA AACPVAAAGR AGVGAEPDGS GRAGGRRRSV YDLSECVPLW GRATTRGRRN AMEDACAAVP PFADVPVRML ASARKLDALG RAGVDDASAA
101: MHLFGVYDGH GGSEVANYCG DRIHVVLREA LGRAAAARGL SGELGGIQEL WEKAFCECFQ RVDDEVSGEA SRFMLAGGVS EARYEPVAAH DVGSTAVVAL
201: VCSSHVIVAN CGDSRVVLCR GKEPMALSVD HKPDRQDERA RIEAAGGHVV NWHGHRVEGV LAMSRSIGDR YIKPFIIPKP EVRVVPRTNG DDCLILASDG
301: LWDVISNEDA CKAARLKILR WHEKNDGTCF SEGGEPTISD PASQAAAAYL VRLALRKGSK DNITVIVIDL KRRKMIKDKT AQD
Best Arabidopsis Sequence Match ( AT1G72770.3 )
(BLAST)
001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GDRYLKPYVI PEPEVTFMPR SREDECLILA SDGLWDVMNN QEVCEIARRR ILMWHKKNGA PPLAERGKGI DPACQAAADY LSMLALQKGS KDNISIIVID
501: LKAQRKFKTR T
Arabidopsis Description
HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.