Factsheet for VIT_04s0008g01420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05300	Soybean	cytosol	71.32	70.43
KRH61549	Soybean	cytosol	68.42	69.3
KRH15739	Soybean	cytosol	68.97	68.22
KRH52222	Soybean	cytosol	67.15	68.01
PGSC0003DMT400075333	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.34	67.16
Solyc12g096020.1.1	Tomato	cytosol, nucleus, plastid	60.44	65.55
GSMUA_Achr7P24000_001	Banana	cytosol	46.46	65.31
Os01t0583100-01	Rice	cytosol	45.19	62.88
HORVU7Hr1G029040.1	Barley	cytosol, peroxisome	33.03	62.12
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	61.16	61.5
Zm00001d011202_P002	Maize	cytosol, peroxisome, plastid	46.46	58.45
HORVU3Hr1G067380.4	Barley	cytosol	35.21	57.57
GSMUA_Achr8P05700_001	Banana	cytosol, peroxisome, plasma membrane	45.37	57.34
VIT_11s0016g01780.t01	Wine grape	plastid	54.08	56.98
HORVU3Hr1G067360.1	Barley	cytosol, peroxisome	5.26	56.86
TraesCS1D01G449700.1	Wheat	cytosol	41.92	56.34
Zm00001d009747_P001	Maize	cytosol	43.01	56.03
TraesCS1A01G441200.1	Wheat	cytosol	41.74	55.83
EES00964	Sorghum	peroxisome, plasma membrane, vacuole	48.82	55.81
HORVU3Hr1G050340.1	Barley	plasma membrane, vacuole	48.28	55.77
TraesCS3B01G240000.1	Wheat	peroxisome, plasma membrane, vacuole	48.28	55.53
TraesCS3A01G209200.1	Wheat	peroxisome, plasma membrane, vacuole	48.09	55.32
TraesCS3D01G212100.1	Wheat	peroxisome, plasma membrane, vacuole	47.73	55.25
Zm00001d039163_P002	Maize	cytosol	43.01	55.24
KXG22681	Sorghum	cytosol	42.83	55.14
Os05t0592800-02	Rice	endoplasmic reticulum, vacuole	44.46	55.06
HORVU1Hr1G094840.9	Barley	extracellular, mitochondrion	41.56	54.78
Zm00001d044301_P001	Maize	cytosol, nucleus	47.73	54.34
TraesCS3D01G249000.1	Wheat	cytosol	36.66	53.3
TraesCS3A01G249000.1	Wheat	cytosol	37.21	53.11
Zm00001d038846_P001	Maize	cytosol, nucleus	35.39	52.7
GSMUA_Achr3P26270_001	Banana	cytosol, peroxisome, plastid	47.01	52.22
KXG22422	Sorghum	cytosol, nucleus, plastid	35.93	52.11
OQU87413	Sorghum	cytosol	36.12	51.96
TraesCS1A01G358600.1	Wheat	cytosol	35.75	51.84
HORVU1Hr1G080290.6	Barley	cytosol	35.93	51.56
TraesCS1B01G375100.1	Wheat	cytosol	35.57	51.44
TraesCS1D01G363500.1	Wheat	cytosol	35.57	51.31
TraesCS1B01G475700.1	Wheat	cytosol	41.38	51.24
Zm00001d011132_P001	Maize	cytosol, nucleus	13.79	51.01
TraesCS3B01G277900.1	Wheat	cytosol	37.39	49.4
Os05t0537400-00	Rice	cytosol	24.86	46.28
Zm00001d011131_P001	Maize	cytosol	23.05	45.04
VIT_11s0016g03180.t01	Wine grape	nucleus	28.68	39.9
VIT_16s0022g02210.t01	Wine grape	nucleus	26.86	39.57
VIT_06s0004g05460.t01	Wine grape	nucleus	28.13	39.44
VIT_13s0019g02200.t01	Wine grape	plastid	27.95	38.5
VIT_02s0025g01390.t01	Wine grape	cytosol, nucleus, plastid	25.77	36.13
TraesCS7A01G047900.1	Wheat	cytosol, mitochondrion, peroxisome	7.26	36.04
VIT_09s0002g03530.t01	Wine grape	nucleus	24.32	36.02
VIT_16s0050g02680.t01	Wine grape	nucleus	19.24	35.93
VIT_02s0025g01550.t01	Wine grape	cytosol, nucleus, peroxisome	21.42	35.65
VIT_09s0002g03600.t01	Wine grape	nucleus	22.87	34.9
VIT_00s0179g00110.t01	Wine grape	vacuole	18.87	28.49
VIT_00s0179g00140.t01	Wine grape	vacuole	18.69	21.73

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100242262	wikigene:100242262	MapMan:11.1.2.1.1.2	MapMan:18.4.24.2.1
Gene3D:3.60.40.10	ProteinID:CCB46580	ProteinID:CCB46580.1	UniProt:F6H3P7	EMBL:FN595231	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100242262	wikigene:LOC100242262	PFAM:PF00481
InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF374	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC60786	UniParc:UPI00021097F2
ArrayExpress:VIT_04s0008g01420	EnsemblPlantsGene:VIT_04s0008g01420	EnsemblPlants:VIT_04s0008g01420.t01	RefSeq:XP_002280195	RefSeq:XP_002280195.1	RefSeq:XP_010648366.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:1178518..1183115

Molecular Weight (calculated)

59970.9 Da

IEP (calculated)

4.397

GRAVY (calculated)

-0.126

Length

551 amino acids

Sequence
(BLAST)

001: MEEMSPAVAV PFRLGNSVCD NPTVASHMDV TRFKLMTDAT SLLSDSATQV STESIAGEDD NCSDLENEVS VVAVSVPVEN REEGAALLDM VSENKSNWVA
101: GDDVVIRESE EDDFLSVEGD PILDSSCSLS VTSETSSICG EDLLAFEANF ETGTPGSLDI EKDGCNDPII AKSSHLGELN AEQEIVSDSL AVTSLEEEIG
201: FRPELKSSEV VIQLPVEKGV SGTLVRSVFE LVYVPLWGFT SICGRRPEME DAVATVPRFF QIPIQMLIGD RVIDGMSKCV SHLTAHFFGV YDGHGGSQVA
301: NYCRDRIHSA LAEEIETAKT GFSDGNVQDY CKELWTKVFK NCFLKVDAEV GGKASLEPVA PETVGSTAVV AIICSSHIIV ANCGDSRAVL YRGKEPIALS
401: VDHKPNREDE YARIEAAGGK VIQWNGHRVF GVLAMSRSIG DRYLKPWIIP EPEVTFIPRA REDECLVLAS DGLWDVMTNE EVCDIARRRI LLWHKKNGVT
501: MLPSERGQGI DPAAQAAAEC LSNRALQKGS KDNITVIVVD LKAQRKFKSK T

Best Arabidopsis Sequence Match ( AT1G72770.3 )
(BLAST)

001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GDRYLKPYVI PEPEVTFMPR SREDECLILA SDGLWDVMNN QEVCEIARRR ILMWHKKNGA PPLAERGKGI DPACQAAADY LSMLALQKGS KDNISIIVID
501: LKAQRKFKTR T

Arabidopsis Description

HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.