Factsheet for VIT_11s0016g03180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60215	Soybean	cytoskeleton, cytosol, nucleus	70.45	72.66
KRH41498	Soybean	nucleus	70.2	72.21
GSMUA_Achr2P09370_001	Banana	cytosol	49.49	60.49
VIT_09s0002g03530.t01	Wine grape	nucleus	48.23	51.34
VIT_09s0002g03600.t01	Wine grape	nucleus	46.21	50.69
VIT_16s0022g02210.t01	Wine grape	nucleus	36.11	38.24
VIT_06s0004g05460.t01	Wine grape	nucleus	36.36	36.64
VIT_13s0019g02200.t01	Wine grape	plastid	36.62	36.25
VIT_16s0050g02680.t01	Wine grape	nucleus	26.01	34.92
VIT_02s0025g01550.t01	Wine grape	cytosol, nucleus, peroxisome	26.52	31.72
VIT_02s0025g01390.t01	Wine grape	cytosol, nucleus, plastid	31.31	31.55
VIT_11s0016g01780.t01	Wine grape	plastid	38.13	28.87
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	39.9	28.83
VIT_04s0008g01420.t01	Wine grape	cytosol	39.9	28.68
VIT_00s0179g00110.t01	Wine grape	vacuole	22.98	24.93
VIT_00s0179g00140.t01	Wine grape	vacuole	21.21	17.72

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100243875	wikigene:100243875	MapMan:18.4.24.2.1	Gene3D:3.60.40.10
EMBL:AM431047	ProteinID:CAN71518	ProteinID:CAN71518.1	ProteinID:CCB51488	ProteinID:CCB51488.1	UniProt:F6HGL2
EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100243875
wikigene:LOC100243875	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF357	SMART:SM00331	SMART:SM00332
SUPFAM:SSF81606	TIGR:TC52276	UniParc:UPI00021081F5	ArrayExpress:VIT_11s0016g03180	EnsemblPlantsGene:VIT_11s0016g03180	EnsemblPlants:VIT_11s0016g03180.t01
unigene:Vvi.13921	unigene:Vvi.19916	RefSeq:XP_002280468	RefSeq:XP_002280468.2	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:2548103..2561412

Molecular Weight (calculated)

43336.9 Da

IEP (calculated)

4.680

GRAVY (calculated)

-0.355

Length

396 amino acids

Sequence
(BLAST)

001: MEPLEDDDLQ PLGSEHELDS TGSGVSSILG TEDARSTTSS GGDISVTSSS SGEYLAAVVA EAVVPRMENP TPASYSGGSG GETTVTVAAR EKCVGRNNKG
101: VTWGFTSVIG RRREMEDAVA VVPGFMSRTC DHIGGCTAPA SRTSREISPV HFFGVYDGHG GSQVAKFCAE RMHEMVVEEW DREAVDGYEW RRRWEVAFSS
201: GFERADNVVM TEEVAPEMVG STAVVVVLSG CQIITSNCGD SRAVLCRGTQ TIPLTVDQKP DREDELRRIE GEGGKVINWN GARVFGVLAM SRAIGDRYLR
301: PWIIPVPEIT FTTRCDEDEC LILASDGLWD VMSNDEVGEV ARRLLRRRRR LMMADETPAQ SVADNLTEIA YGRNSSDNIS IIVVDLKSKR RRQQRQ

Best Arabidopsis Sequence Match ( AT4G26080.1 )
(BLAST)

001: MEEVSPAIAG PFRPFSETQM DFTGIRLGKG YCNNQYSNQD SENGDLMVSL PETSSCSVSG SHGSESRKVL ISRINSPNLN MKESAAADIV VVDISAGDEI
101: NGSDITSEKK MISRTESRSL FEFKSVPLYG FTSICGRRPE MEDAVSTIPR FLQSSSGSML DGRFDPQSAA HFFGVYDGHG GSQVANYCRE RMHLALAEEI
201: AKEKPMLCDG DTWLEKWKKA LFNSFLRVDS EIESVAPETV GSTSVVAVVF PSHIFVANCG DSRAVLCRGK TALPLSVDHK PDREDEAARI EAAGGKVIQW
301: NGARVFGVLA MSRSIGDRYL KPSIIPDPEV TAVKRVKEDD CLILASDGVW DVMTDEEACE MARKRILLWH KKNAVAGDAS LLADERRKEG KDPAAMSAAE
401: YLSKLAIQRG SKDNISVVVV DLKPRRKLKS KPLN

Arabidopsis Description

ABI1Protein phosphatase 2C 56 [Source:UniProtKB/Swiss-Prot;Acc:P49597]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.