Factsheet for VIT_09s0002g03530.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03600.t01	Wine grape	nucleus	95.7	98.61
VIT_11s0016g03180.t01	Wine grape	nucleus	51.34	48.23
GSMUA_Achr2P09370_001	Banana	cytosol	41.13	47.22
VIT_06s0004g05460.t01	Wine grape	nucleus	35.22	33.33
VIT_13s0019g02200.t01	Wine grape	plastid	35.48	33.0
VIT_16s0022g02210.t01	Wine grape	nucleus	32.53	32.35
VIT_16s0050g02680.t01	Wine grape	nucleus	24.73	31.19
VIT_02s0025g01550.t01	Wine grape	cytosol, nucleus, peroxisome	27.69	31.12
VIT_02s0025g01390.t01	Wine grape	cytosol, nucleus, plastid	30.11	28.5
VIT_11s0016g01780.t01	Wine grape	plastid	36.29	25.81
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	36.02	24.45
VIT_04s0008g01420.t01	Wine grape	cytosol	36.02	24.32
VIT_00s0179g00110.t01	Wine grape	vacuole	22.85	23.29
VIT_00s0179g00140.t01	Wine grape	vacuole	22.85	17.93

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100258395	wikigene:100258395	EntrezGene:100261766	wikigene:100261766
MapMan:18.4.24.2.1	Gene3D:3.60.40.10	ProteinID:CBI36061	ProteinID:CBI36061.3	UniProt:D7U0B5	EMBL:FN596494
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100258395	wikigene:LOC100258395
EntrezGene:LOC100261766	wikigene:LOC100261766	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF357	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI00015C847D	ArrayExpress:VIT_09s0002g03530	EnsemblPlantsGene:VIT_09s0002g03530	EnsemblPlants:VIT_09s0002g03530.t01	RefSeq:XP_002278143
RefSeq:XP_002278143.1	RefSeq:XP_002278271	RefSeq:XP_002278271.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:3205112..3219645

Molecular Weight (calculated)

40479.8 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.349

Length

372 amino acids

Sequence
(BLAST)

001: MAHPFEAHHI LNLRAPCDSI RPPNVSGKRP ASSFSQNGNS NSRNGEAPIP VCSNSSLAAG GSGVPTCVGK DNKKVSWGRS SDVGKRSGME DSLAIVPGFM
101: SLSCKQVGGC TAPECTYAAE DSPVHFFGLY DGHGGPQVSC YCARMLHEMV AEEWERGGGD EWSKRWEVAL RRAYGRADDA LKDKALAPYS VGSTSLVVVV
201: SPCQIIAANC GDSRAVLCRG TQAIPLTVDH KLDRQDELAR IEEAGGQILY WQGPRVEGVL SMTRAIGDHY LKPWIISEPE VAFTTRSDED ECLILASDGL
301: WDVLSNEQVV KVARNSLREE RRKALLNDSS LPPAHSAADS LLCCALAEYS DDNISIIVVD LKSRKRRHQY RH

Best Arabidopsis Sequence Match ( AT1G72770.1 )
(BLAST)

001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GDRYLKPYVI PEPEVTFMPR SREDECLILA SDGLWDVMNN QEVCEIARRR ILMWHKKNGA PPLAERGKGI DPACQAAADY LSMLALQKGS KDNISIIVID
501: LKAQRKFKTR T

Arabidopsis Description

HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.