Factsheet for VIT_11s0016g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g01420.t01	Wine grape	cytosol	56.98	54.08
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	51.43	49.09
VIT_11s0016g03180.t01	Wine grape	nucleus	28.87	38.13
VIT_16s0022g02210.t01	Wine grape	nucleus	26.96	37.7
VIT_13s0019g02200.t01	Wine grape	plastid	28.49	37.25
VIT_06s0004g05460.t01	Wine grape	nucleus	27.92	37.15
VIT_16s0050g02680.t01	Wine grape	nucleus	20.84	36.95
VIT_09s0002g03530.t01	Wine grape	nucleus	25.81	36.29
VIT_02s0025g01390.t01	Wine grape	cytosol, nucleus, plastid	26.58	35.37
VIT_09s0002g03600.t01	Wine grape	nucleus	24.09	34.9
VIT_02s0025g01550.t01	Wine grape	cytosol, nucleus, peroxisome	21.99	34.74
VIT_00s0179g00110.t01	Wine grape	vacuole	19.89	28.49
VIT_00s0179g00140.t01	Wine grape	vacuole	19.12	21.1

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100267957	wikigene:100267957	MapMan:11.1.2.1.1.2	MapMan:18.4.24.2.1
Gene3D:3.60.40.10	ProteinID:CCB51432	ProteinID:CCB51432.1	UniProt:F6HGQ0	EMBL:FN595756	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100267957	wikigene:LOC100267957	PFAM:PF00481
InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF374	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0002107F61	ArrayExpress:VIT_11s0016g01780
EnsemblPlantsGene:VIT_11s0016g01780	EnsemblPlants:VIT_11s0016g01780.t01	unigene:Vvi.2925	RefSeq:XP_002279140	RefSeq:XP_002279140.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:1424769..1427574

Molecular Weight (calculated)

56890.2 Da

IEP (calculated)

4.687

GRAVY (calculated)

-0.260

Length

523 amino acids

Sequence
(BLAST)

001: MEIAGLKLIA NTATLLSEHH PYMVSPLVSG SSGNQAFNCN NSESVPNEVT INDISLASSH SIEEENGEDD FGSWGGGQLM NNSCSLSVAG DTESICSEEF
101: LGLKGFSEFN SPSSMDITEN RHSLQLNATT NLLESTVESE HVRDVLAVGG GLEGEGGEGS DPKLFTRVLE LTNERRMNRT VSDSVFEFNC VPLWGFTSIC
201: GRRLEMEDAV AAVPNFLKIP IQTLTDGLLL NGMNPELDYL TAHFFGVYDG HGGCQVANYC RDRLHLALAE EVELLKESLC NGSAGGNWQE QWEKVFSNCF
301: LKVDSVIGGG CRGNTDASEA GPSEDSSTLV ASETVGSTAV VTIICQTHII VANCGDSRAV LCRGKVPVPL SIDHKPSRED EYARIEAAGG KIIQWDGLRV
401: CGVLAMSRSI GDRYLKPWII PDPEVMYIPR EKEDECLILA SDGLWDVMTN QEVCDTARRR ILLWHKKNGH NPPAERGRGV DPAAQAAAEC LSKLALQKGS
501: KDNITVVVVD LKPRRKLKRK TQQ

Best Arabidopsis Sequence Match ( AT1G72770.3 )
(BLAST)

001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GDRYLKPYVI PEPEVTFMPR SREDECLILA SDGLWDVMNN QEVCEIARRR ILMWHKKNGA PPLAERGKGI DPACQAAADY LSMLALQKGS KDNISIIVID
501: LKAQRKFKTR T

Arabidopsis Description

HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.