Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
- golgi 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G240000.1 | Wheat | peroxisome, plasma membrane, vacuole | 98.95 | 98.33 |
| TraesCS3A01G209200.1 | Wheat | peroxisome, plasma membrane, vacuole | 98.11 | 97.49 |
| HORVU3Hr1G050340.1 | Barley | plasma membrane, vacuole | 96.85 | 96.65 |
| Os01t0583100-01 | Rice | cytosol | 73.53 | 88.38 |
| Zm00001d011202_P002 | Maize | cytosol, peroxisome, plastid | 76.05 | 82.65 |
| EES00964 | Sorghum | peroxisome, plasma membrane, vacuole | 82.14 | 81.12 |
| Zm00001d044301_P001 | Maize | cytosol, nucleus | 81.51 | 80.17 |
| PGSC0003DMT400021210 | Potato | cytosol, nucleus, peroxisome | 14.92 | 78.89 |
| Solyc08g062640.2.1 | Tomato | cytosol | 21.01 | 74.63 |
| TraesCS1D01G449700.1 | Wheat | cytosol | 59.24 | 68.78 |
| GSMUA_Achr7P24000_001 | Banana | cytosol | 53.36 | 64.8 |
| GSMUA_Achr8P05700_001 | Banana | cytosol, peroxisome, plasma membrane | 56.3 | 61.47 |
| TraesCS1D01G363500.1 | Wheat | cytosol | 44.54 | 55.5 |
| CDX96761 | Canola | cytosol | 40.55 | 55.14 |
| TraesCS3D01G249000.1 | Wheat | cytosol | 43.7 | 54.88 |
| CDX83901 | Canola | cytosol | 40.34 | 54.86 |
| GSMUA_Achr3P26270_001 | Banana | cytosol, peroxisome, plastid | 56.51 | 54.23 |
| Bra016595.1-P | Field mustard | cytosol | 46.43 | 53.9 |
| CDX72943 | Canola | cytosol, peroxisome, plastid | 48.74 | 48.84 |
| Solyc12g096020.1.1 | Tomato | cytosol, nucleus, plastid | 52.1 | 48.82 |
| CDX96432 | Canola | cytosol, peroxisome, plastid | 48.95 | 48.14 |
| Bra016034.1-P | Field mustard | cytosol, peroxisome, plastid | 48.95 | 48.14 |
| VIT_04s0008g01420.t01 | Wine grape | cytosol | 55.25 | 47.73 |
| PGSC0003DMT400075333 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 53.15 | 47.2 |
| CDY26234 | Canola | cytosol | 48.95 | 46.98 |
| KRH61549 | Soybean | cytosol | 53.15 | 46.51 |
| AT1G17550.1 | Thale cress | cytosol | 49.79 | 46.38 |
| KRH52222 | Soybean | cytosol | 52.94 | 46.32 |
| AT1G72770.1 | Thale cress | cytosol | 49.58 | 46.18 |
| Bra025964.1-P | Field mustard | cytosol | 48.95 | 45.87 |
| CDY48313 | Canola | cytosol | 48.11 | 45.71 |
| VIT_09s0002g01850.t01 | Wine grape | cytosol, peroxisome, plastid | 52.31 | 45.44 |
| PGSC0003DMT400006608 | Potato | plastid | 51.26 | 44.77 |
| KRH05300 | Soybean | cytosol | 52.31 | 44.62 |
| KRH15739 | Soybean | cytosol | 51.89 | 44.34 |
| TraesCS5D01G188600.1 | Wheat | peroxisome | 30.88 | 42.12 |
| TraesCS1D01G419000.1 | Wheat | nucleus | 31.51 | 39.79 |
| TraesCS3D01G238000.1 | Wheat | cytosol, nucleus, plastid | 32.77 | 39.0 |
| Solyc08g062650.2.1 | Tomato | extracellular | 37.4 | 37.95 |
| TraesCS3D01G355900.1 | Wheat | plastid | 30.88 | 37.03 |
| TraesCS7D01G042600.1 | Wheat | cytosol | 25.84 | 35.86 |
| TraesCS7D01G042300.1 | Wheat | cytosol | 27.1 | 34.86 |
| TraesCS4D01G210900.1 | Wheat | nucleus | 29.2 | 33.9 |
| TraesCS2D01G000300.1 | Wheat | cytosol | 28.57 | 29.96 |
| TraesCS3D01G153200.1 | Wheat | nucleus, peroxisome, plastid | 21.22 | 28.77 |
| TraesCS3D01G153000.1 | Wheat | peroxisome | 17.86 | 27.78 |
| TraesCS7D01G390600.1 | Wheat | plasma membrane | 20.8 | 9.28 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:11.1.2.1.1.2 | MapMan:18.4.24.2.1 | Gene3D:3.60.40.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004722 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043169 | InterPro:IPR001932 |
| InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C | InterPro:PP2C_BS | InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom |
| ScanProsite:PS01032 | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF374 | SMART:SM00332 | SUPFAM:SSF81606 |
| EnsemblPlantsGene:TraesCS3D01G212100 | EnsemblPlants:TraesCS3D01G212100.1 | TIGR:cd00143 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:-:284208864..284212875
Molecular Weight (calculated)
49729.1 Da
IEP (calculated)
4.742
GRAVY (calculated)
0.110
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDVAVAALA TAPTPVFSPA TAGLTLIAAA AAEPIAAVVA GAMEGVPVSF SVPPVRTTTD DGLPTATGGE WGEASAAGSP CSVTSDCSSV ASADFEGVGL
101: GFFGAGVEGG AVVFEDSAAS AATVEAEARV AAGGRSVFAV ECVPLWGFTS ICGRRPEMED AVVAVPRFFG LPLWMLTGNN MVDGLDPISF RLPAHFFGVY
201: DGHGGAQVAD YCRDRLHAAL VEELSRIEGS ANLGAVEFKK QWEKAFVDCF SRVDDEIAGK ATRGGGGNVG TSSVTAMAMA DPIAPETVGS TAVVAVICSS
301: HIIVSNCGDS RAVLCRGKQP VPLSVDHKPN REDEYARIEA EGGKVIQWNG YRVFGVLAMS RSIGDRYLKP WIIPVPEVTI VPRAKDDECL ILASDGLWDV
401: LSNEEVCDVA RKRILLWHKK NGVNLSSAQR SGDSPDPAAQ AAAECLSKLA LQKGSKDNIT VIVVDLKAQR KFKSKT
101: GFFGAGVEGG AVVFEDSAAS AATVEAEARV AAGGRSVFAV ECVPLWGFTS ICGRRPEMED AVVAVPRFFG LPLWMLTGNN MVDGLDPISF RLPAHFFGVY
201: DGHGGAQVAD YCRDRLHAAL VEELSRIEGS ANLGAVEFKK QWEKAFVDCF SRVDDEIAGK ATRGGGGNVG TSSVTAMAMA DPIAPETVGS TAVVAVICSS
301: HIIVSNCGDS RAVLCRGKQP VPLSVDHKPN REDEYARIEA EGGKVIQWNG YRVFGVLAMS RSIGDRYLKP WIIPVPEVTI VPRAKDDECL ILASDGLWDV
401: LSNEEVCDVA RKRILLWHKK NGVNLSSAQR SGDSPDPAAQ AAAECLSKLA LQKGSKDNIT VIVVDLKAQR KFKSKT
001: MEEISPAVAL TLGLANTMCD SGISSTFDIS ELENVTDAAD MLCNQKRQRY SNGVVDCIMG SVSEEKTLSE VRSLSSDFSV TVQESEEDEP LVSDATIISE
101: GLIVVDARSE ISLPDTVETD NGRVLATAII LNETTIEQVP TAEVLIASLN HDVNMEVATS EVVIRLPEEN PNVARGSRSV YELECIPLWG TISICGGRSE
201: MEDAVRALPH FLKIPIKMLM GDHEGMSPSL PYLTSHFFGV YDGHGGAQVA DYCHDRIHSA LAEEIERIKE ELCRRNTGEG RQVQWEKVFV DCYLKVDDEV
301: KGKINRPVVG SSDRMVLEAV SPETVGSTAV VALVCSSHII VSNCGDSRAV LLRGKDSMPL SVDHKPDRED EYARIEKAGG KVIQWQGARV SGVLAMSRSI
401: GDQYLEPFVI PDPEVTFMPR AREDECLILA SDGLWDVMSN QEACDFARRR ILAWHKKNGA LPLAERGVGE DQACQAAAEY LSKLAIQMGS KDNISIIVID
501: LKAQRKFKTR S
101: GLIVVDARSE ISLPDTVETD NGRVLATAII LNETTIEQVP TAEVLIASLN HDVNMEVATS EVVIRLPEEN PNVARGSRSV YELECIPLWG TISICGGRSE
201: MEDAVRALPH FLKIPIKMLM GDHEGMSPSL PYLTSHFFGV YDGHGGAQVA DYCHDRIHSA LAEEIERIKE ELCRRNTGEG RQVQWEKVFV DCYLKVDDEV
301: KGKINRPVVG SSDRMVLEAV SPETVGSTAV VALVCSSHII VSNCGDSRAV LLRGKDSMPL SVDHKPDRED EYARIEKAGG KVIQWQGARV SGVLAMSRSI
401: GDQYLEPFVI PDPEVTFMPR AREDECLILA SDGLWDVMSN QEACDFARRR ILAWHKKNGA LPLAERGVGE DQACQAAAEY LSKLAIQMGS KDNISIIVID
501: LKAQRKFKTR S
Arabidopsis Description
HAB2Protein phosphatase 2C 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.