Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G087500.1 | Wheat | plastid | 97.7 | 99.07 |
| TraesCS2A01G089400.1 | Wheat | plastid | 98.16 | 74.48 |
| TraesCS4B01G189800.1 | Wheat | cytosol | 72.35 | 70.09 |
| GSMUA_Achr9P04600_001 | Banana | cytosol | 44.7 | 67.83 |
| TraesCS1B01G306800.1 | Wheat | mitochondrion | 60.37 | 67.53 |
| GSMUA_Achr9P17980_001 | Banana | cytosol | 45.62 | 66.44 |
| KRH00319 | Soybean | cytosol | 53.0 | 64.97 |
| GSMUA_AchrUn_... | Banana | plastid | 47.0 | 64.56 |
| Bra028758.1-P | Field mustard | cytosol | 48.39 | 63.64 |
| KRH49452 | Soybean | plastid | 52.07 | 63.48 |
| TraesCS3B01G380300.1 | Wheat | mitochondrion, plastid | 60.37 | 63.28 |
| GSMUA_Achr6P32790_001 | Banana | cytosol | 61.29 | 63.03 |
| VIT_13s0067g01940.t01 | Wine grape | plastid | 59.91 | 61.32 |
| GSMUA_Achr8P21220_001 | Banana | cytosol | 47.0 | 60.0 |
| Solyc05g052420.1.1 | Tomato | cytosol | 22.58 | 59.76 |
| Solyc10g085310.1.1 | Tomato | plastid | 56.68 | 57.75 |
| KRH76014 | Soybean | cytosol | 57.14 | 57.41 |
| CDY18391 | Canola | plastid | 53.92 | 57.35 |
| Bra017125.1-P | Field mustard | plastid | 53.92 | 57.35 |
| CDY54415 | Canola | cytosol | 53.92 | 57.35 |
| PGSC0003DMT400053120 | Potato | cytosol, plastid | 53.0 | 57.21 |
| PGSC0003DMT400053119 | Potato | cytosol, plastid | 53.0 | 57.21 |
| PGSC0003DMT400053102 | Potato | cytosol, plastid | 53.0 | 57.21 |
| Solyc03g095780.1.1 | Tomato | plastid | 53.0 | 57.21 |
| PGSC0003DMT400028658 | Potato | nucleus | 55.76 | 56.81 |
| KRH73249 | Soybean | plastid | 54.38 | 56.73 |
| Solyc09g015380.1.1 | Tomato | plastid | 52.53 | 56.72 |
| VIT_08s0058g00470.t01 | Wine grape | plastid | 58.99 | 56.39 |
| Solyc10g076410.1.1 | Tomato | plastid | 52.53 | 56.16 |
| AT2G38310.1 | Thale cress | plastid | 53.46 | 56.04 |
| PGSC0003DMT400041080 | Potato | mitochondrion | 53.46 | 56.04 |
| CDX91449 | Canola | plastid | 53.46 | 56.04 |
| Bra000052.1-P | Field mustard | plastid | 53.0 | 55.56 |
| CDY07739 | Canola | plastid | 53.0 | 55.56 |
| CDY04951 | Canola | cytosol | 50.23 | 55.33 |
| CDY54453 | Canola | plastid | 53.0 | 55.29 |
| CDY14471 | Canola | plastid | 52.53 | 55.07 |
| Bra005115.1-P | Field mustard | plastid | 37.33 | 54.36 |
| PGSC0003DMT400061535 | Potato | plastid | 54.38 | 54.13 |
| CDX98844 | Canola | cytosol | 50.69 | 53.92 |
| PGSC0003DMT400069734 | Potato | mitochondrion, plastid | 51.61 | 53.85 |
| TraesCS7B01G269600.1 | Wheat | cytosol | 48.85 | 53.81 |
| PGSC0003DMT400075056 | Potato | plastid | 53.0 | 53.74 |
| AT5G05440.1 | Thale cress | cytosol | 50.23 | 53.69 |
| CDX70150 | Canola | cytosol | 50.23 | 53.43 |
| Bra009113.1-P | Field mustard | cytosol | 50.23 | 53.43 |
| KRH14908 | Soybean | plastid | 53.46 | 53.21 |
| CDX93191 | Canola | cytosol | 49.77 | 53.2 |
| CDX80959 | Canola | cytosol | 49.31 | 52.71 |
| CDY52923 | Canola | cytosol | 49.77 | 52.68 |
| Bra017012.1-P | Field mustard | cytosol | 49.77 | 52.68 |
| CDY72318 | Canola | cytosol | 48.39 | 51.72 |
| Bra005853.1-P | Field mustard | cytosol | 48.39 | 51.72 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 47.0 | 51.52 |
| CDX74796 | Canola | cytosol, nucleus, plastid | 50.23 | 51.42 |
| Bra004967.1-P | Field mustard | mitochondrion | 49.31 | 50.47 |
| AT2G40330.1 | Thale cress | cytosol | 49.31 | 49.77 |
| CDY18867 | Canola | cytosol, mitochondrion, nucleus, plastid | 48.39 | 49.53 |
| CDY24911 | Canola | cytosol, mitochondrion | 48.39 | 49.3 |
| Bra000184.1-P | Field mustard | cytosol, mitochondrion | 47.93 | 49.06 |
| CDY07608 | Canola | cytosol, mitochondrion | 47.93 | 49.06 |
| KRH31193 | Soybean | cytosol, golgi, plastid | 53.0 | 44.75 |
| TraesCS1B01G206600.1 | Wheat | cytosol, unclear | 43.78 | 44.6 |
| Solyc06g050500.2.1 | Tomato | plastid | 56.22 | 44.36 |
| TraesCS1B01G145800.1 | Wheat | cytosol | 40.09 | 42.44 |
| TraesCS7B01G232100.1 | Wheat | cytoskeleton, cytosol, nucleus | 31.34 | 34.87 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G105300.1 | EnsemblPlantsGene:TraesCS2B01G105300 | Gene3D:3.30.530.20 | InterPro:IPR023393 | InterPro:Polyketide_cyclase/dehydratase | InterPro:START-like_dom_sf |
| PANTHER:PTHR31213 | PANTHER:PTHR31213:SF3 | PFAM:PF10604 | SEG:seg | SUPFAM:SSF55961 | TIGR:cd07821 |
| MapMan:11.1.2.1.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:65882775..65883687
Molecular Weight (calculated)
22804.0 Da
IEP (calculated)
7.894
GRAVY (calculated)
-0.110
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTPYSAAAL QQHHRLVSSS GGLAVAAATG AHRCGEHDGT VPPEVARHHE HAAPGGRCCC SAVVQRVAAP AADVWAVVRR FDQPQAYKSF VRSCALLDGD
101: GGVGTLREVR VVSGLPAASS RERLEILDDE RHVLSFSVVG GEHRLRNYRS VTTVHPAPGG SASATLVVES YVVDVPPGNT PEDTRVFVDT IVKCNLQSLA
201: RTAEKLAGRG AAYGALP
101: GGVGTLREVR VVSGLPAASS RERLEILDDE RHVLSFSVVG GEHRLRNYRS VTTVHPAPGG SASATLVVES YVVDVPPGNT PEDTRVFVDT IVKCNLQSLA
201: RTAEKLAGRG AAYGALP
001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL
Arabidopsis Description
PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.